PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.57SE1
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 275aa    MW: 30913.8 Da    PI: 5.189
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.57SE1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.6e-0895143348
                      SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 
                       W+++E +++   +++  ++    +W+++a++++ g+t++q+++r+q +l
      Aradu.57SE1  95 VWSEDENKQFEIIIAECLPEemqnRWEAVAACLP-GKTPEQIQERFQELL 143
                      6999999999888887776677778*********.************875 PP
2Myb_DNA-binding42.21.8e-13208252348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       WT++E el++++ k+lG + Wk+I++   k+Rt +q+ s+ qk+l
      Aradu.57SE1 208 HWTQQEKELFLRGYKELGRN-WKRISEDYVKTRTKEQVASHAQKVL 252
                      6*****************66.**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.7E-592145IPR001005SANT/Myb domain
SuperFamilySSF466896.68E-893144IPR009057Homeodomain-like
PfamPF002491.4E-695143IPR001005SANT/Myb domain
PROSITE profilePS500907.10896143IPR017877Myb-like domain
CDDcd001672.18E-796143No hitNo description
Gene3DG3DSA:1.10.10.608.8E-7106144IPR009057Homeodomain-like
PROSITE profilePS5129417.864201256IPR017930Myb domain
SuperFamilySSF466892.17E-12201255IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-12204251IPR006447Myb domain, plants
SMARTSM007178.9E-11205254IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-9208254IPR009057Homeodomain-like
PfamPF002492.3E-10208252IPR001005SANT/Myb domain
CDDcd001678.20E-8209252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MLEVPLPDAE LFAADVGPSQ FQSPSSSNFA PNVGGNQQPQ PQLPLPSQLA TDVPLLQFAA  60
NVGGNQPPQL QLPPLHEFPA DVCGYQQPQA QPEPVWSEDE NKQFEIIIAE CLPEEMQNRW  120
EAVAACLPGK TPEQIQERFQ ELLTDINLIH KSYINLHHTS IAPAAPPTTL ERNPLSLPGT  180
SEQNQPANTN IIEHQPLTKT TERKKTVHWT QQEKELFLRG YKELGRNWKR ISEDYVKTRT  240
KEQVASHAQK VLKKLAEKIE EITFVMNDSK LSSHS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.57SE1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025616409.11e-157uncharacterized protein LOC112708481
TrEMBLA0A444XWT51e-92A0A444XWT5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2080624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-22MYB family protein