PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.4XH5K
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 586aa    MW: 66247.9 Da    PI: 6.628
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.4XH5KgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.8e-141562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l +++  +G g+W++++ + g+ R +k+c++rw +yl
      Aradu.4XH5K 15 KGLWSPEEDNKLRNYILNYGHGCWSSVPIKAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding491.4e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T++E++ ++  +++lG++ W+ Ia++++ gRt++++k++w++yl
      Aradu.4XH5K  68 RGMFTKQEEDTILTFHHMLGNK-WSQIAQKLP-GRTDNEIKNYWHSYL 113
                      789*******************.*********.************997 PP
3Myb_DNA-binding61.61.6e-19300347148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT+eEde l++++k++G g+W+t+++  g+ R++k+c++rw +yl
      Aradu.4XH5K 300 RGAWTPEEDEALIEYIKKHGHGSWRTVPKQAGLLRCGKSCRLRWINYL 347
                      89******************************99************97 PP
4Myb_DNA-binding50.83.8e-16353396146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++TteE+  +++++ +lG++ W++Ia++++ gRt++++k++w++
      Aradu.4XH5K 353 RGPFTTEEEGTIIQLHGMLGNR-WAAIASHLP-GRTDNEIKNFWNT 396
                      89********************.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-21965IPR009057Homeodomain-like
PROSITE profilePS5129416.0641062IPR017930Myb domain
SuperFamilySSF466893.59E-2713109IPR009057Homeodomain-like
SMARTSM007173.2E-101464IPR001005SANT/Myb domain
PfamPF002491.5E-121562IPR001005SANT/Myb domain
CDDcd001672.74E-81862No hitNo description
PROSITE profilePS5129424.37863117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2466117IPR009057Homeodomain-like
SMARTSM007176.0E-1467115IPR001005SANT/Myb domain
PfamPF002498.7E-1568113IPR001005SANT/Myb domain
CDDcd001671.03E-971113No hitNo description
Gene3DG3DSA:1.10.10.601.5E-26291350IPR009057Homeodomain-like
PROSITE profilePS5129426.059295351IPR017930Myb domain
SuperFamilySSF466892.51E-31297394IPR009057Homeodomain-like
SMARTSM007172.6E-15299349IPR001005SANT/Myb domain
PfamPF002491.2E-17300347IPR001005SANT/Myb domain
CDDcd001671.10E-11302347No hitNo description
Gene3DG3DSA:1.10.10.602.3E-25351402IPR009057Homeodomain-like
SMARTSM007171.1E-14352400IPR001005SANT/Myb domain
PROSITE profilePS5129420.106352402IPR017930Myb domain
PfamPF002498.2E-15353397IPR001005SANT/Myb domain
CDDcd001672.13E-9355396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MGCQKIEKTK AKHRKGLWSP EEDNKLRNYI LNYGHGCWSS VPIKAGLQRN GKSCRLRWIN  60
YLRPGLKRGM FTKQEEDTIL TFHHMLGNKW SQIAQKLPGR TDNEIKNYWH SYLKKKVAKE  120
KEIDESHQQV QYATSSSETI DYSFSPNKLV TNDPNYGLLL QNMDKPAPNL EASHGSLPKL  180
LFAEWLSLDQ VNGGSSMNSD ESLMILGNGF DQNSTFQEDL MHMSSSEGPF GGEYQNSLSQ  240
CSATEVYNSE VNKFSNQVVG NDYIQHFIDD DADLCSNFSL NNGAMYMGKT PCCDKHGVRR  300
GAWTPEEDEA LIEYIKKHGH GSWRTVPKQA GLLRCGKSCR LRWINYLRPD IKRGPFTTEE  360
EGTIIQLHGM LGNRWAAIAS HLPGRTDNEI KNFWNTQLKK RLPRSSFVPD HNNVKSESPS  420
TRHMVQWESA RVEAEARLSM ESSLHNSFSA SESYQDHFLQ LWHSEVGQSF RVIKAKEEGA  480
VVTQNLVSQA SLSSSKLESS SEVSLKLKNT ESSFFADITH EQQKSSSKAK LEDGGTAESS  540
LGYYEFLDTS DSSINHLLDV PDGEVLFLGQ NDNFLNTLDG RCEVLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26154027108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.4XH5K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015967275.10.0transcription factor LAF1-like
RefseqXP_025656825.10.0transcription factor MYB41
SwissprotQ9M2D95e-93MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A445CZ460.0A0A445CZ46_ARAHY; Uncharacterized protein
STRINGXP_007143400.11e-136(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.13e-90myb domain protein 17