PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.40HH4
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ZF-HD
Protein Properties Length: 262aa    MW: 28313.6 Da    PI: 7.8787
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.40HH4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.56.9e-3360114358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  k +Y+eClkNhA+ +Ggha+DGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e+e
  Aradu.40HH4  60 KPKYRECLKNHAVGIGGHALDGCGEFMPA-GTEGTLDALKCAACNCHRNFHRKETE 114
                  568*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015663.1E-3062112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047709.8E-3062113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2262114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.57663112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.12E-20186260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-33188261IPR009057Homeodomain-like
TIGRFAMsTIGR015652.8E-26199255IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEFDEQEEQE EELCVPGGTG YDPIGNPTRV KMSGSEPMLV VQPMTVRNNN NNNNSSNMVK  60
PKYRECLKNH AVGIGGHALD GCGEFMPAGT EGTLDALKCA ACNCHRNFHR KETELAGAGP  120
GGGGPYLLTH HPHHHQPPPF AAYYRTPAGY LHVSGGQQRA GTLALPSTSG AGGGGTARDF  180
EQEDVSGGGG GGGGGSSSRK RFRTKFTQEQ KEKMLELAER LGWRIQKHDE GAVQEFCNET  240
GVKRHVLKVW MHNNKHTLGK KP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-272002571875ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185195SGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.40HH4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963376.10.0zinc-finger homeodomain protein 1
SwissprotA2Z2593e-77ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH53e-77ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A444WVZ60.0A0A444WVZ6_ARAHY; Uncharacterized protein
STRINGGLYMA02G04550.21e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-61homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]