PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.40GCA
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 288aa    MW: 32735.8 Da    PI: 8.4882
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.40GCAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.8e-122594148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......................TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......................kgRtlkqcksrwqkyl 48
                     +g+WT +Ed +l +++  +G g+W+++ar  g                      ++R++k+c++rw++yl
      Aradu.40GCA 25 KGPWTVDEDAILTNYISTHGEGHWNSVARSAGiwhvlshslfnydlskliissgLKRSGKSCRLRWLNYL 94
                     79******************************************************************97 PP
2Myb_DNA-binding47.54.2e-15100143146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E+ l++d++ ++G++ W++Ia++++ gRt++++k++w++
      Aradu.40GCA 100 RGNITLQEQILILDLHFRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 143
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.932094IPR017877Myb-like domain
SuperFamilySSF466892.41E-2522141IPR009057Homeodomain-like
SMARTSM007179.1E-112496IPR001005SANT/Myb domain
PfamPF002499.3E-122594IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-1926101IPR009057Homeodomain-like
CDDcd001671.16E-62794No hitNo description
PROSITE profilePS5129421.50495149IPR017930Myb domain
SMARTSM007174.1E-1399147IPR001005SANT/Myb domain
PfamPF002491.7E-13100143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-21102147IPR009057Homeodomain-like
CDDcd001675.12E-9104143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDVNVIKKSE GSQVQQLANE MGLRKGPWTV DEDAILTNYI STHGEGHWNS VARSAGIWHV  60
LSHSLFNYDL SKLIISSGLK RSGKSCRLRW LNYLRPDVRR GNITLQEQIL ILDLHFRWGN  120
RWSKIAQHLP GRTDNEIKNY WRTRVIKQAK QLKCDVNSKQ FRDALRYVWM PRLLERLHPA  180
PQKLTNQTEP ETQTGVLVSN RNGSDSGPLL CAKQSNCLSD SSSGQSVSVG NQWSSFNNQL  240
LFEQGTNENG HGCGGGGESL ECLWNDENVW FLQQQLCDDL EVKFNSLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-192314125120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.40GCA
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025618640.10.0transcription factor MYB2
SwissprotQ10MB41e-75MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A444XI221e-171A0A444XI22_ARAHY; Uncharacterized protein
STRINGGLYMA10G01330.19e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.15e-72myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]