PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.4097C
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 422aa    MW: 48295.7 Da    PI: 9.0875
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.4097CgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.71.4e-1651137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++k+   ++i+++  +C++egk +++ ++   +++++++   +C a++ ++  k  g   ++k++l+H+H+ +p
  Aradu.4097C  51 KFYKDYAKAAGFSTRVRSTNKK--GNKIKNQLITCNREGKWKSKISS---TEKKNPTAGLNCAARIYIHTLKdVGASIISKVVLHHSHPYCP 137
                  6****************98887..77799*************99888...8889999***********9988799*************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1351137IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.976263299IPR007527Zinc finger, SWIM-type
SMARTSM005750.0062274301IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDDSTSDYQL NQGEVDFEFA SNEVSEALSV VDDQFVPKVG MTFKTLEDAA KFYKDYAKAA  60
GFSTRVRSTN KKGNKIKNQL ITCNREGKWK SKISSTEKKN PTAGLNCAAR IYIHTLKDVG  120
ASIISKVVLH HSHPYCPTQA EMLKQYRELS MSVRRTIENN EEADLYEDRH IWFITRNSSL  180
IQFVKHYDNC LGSKEQAERE SDATDFHTVI PCATKTSIEA QFQDVYTYQK GKANCITRLT  240
NSALGYSVYE VGEQVSTSIF NKFVVTYDSV VAEVKCQCLL FESRGIMCRH TLSVLSFERV  300
SQVSSRYILK RWSKKVKRRH THIKSSHDEP MLELRSKRFD ELVFHLQNIY EFASVSEEVT  360
GILHRAYDNV MVEMESLKAK RKGTSSLSHE DANLKSVNEL QSPPRIQTRG RPKNRLGSKL  420
DK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.4097C
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-159protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.25e-20far-red elongated hypocotyls 3