PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.3K14G

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 436aa MW: 50017.1 Da PI: 5.9686

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.3K14G	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.6	9.8e-24	92	183	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk+ GFs rks+ +++ +n+ +t++ fvC ++g+r+ +++ ++++++++++tr+gC a+++v+ ++ +g+w v+ +++eHnHe+ Aradu.3K14G 92 SFYNLYAKMNGFSARKSRIRRNVNND-VTQQAFVCFRQGFRDLCSDNdaARHKQEPKPTTRCGCGAEMRVHIHEeTGRWIVSYFQEEHNHEML 183 5******************96655.**********9988886677888899**********9999*************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-21	92	183	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.94	260	308	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0018	283	310	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MAGLEDFCAE QEAPLYSEGM NVLHDLDPQE RTLEDVSDCV SDFDEYFGDN FYDDWDNRAI 60 NGIADLQIVK FKEITADQIR RLHFPDRSVA FSFYNLYAKM NGFSARKSRI RRNVNNDVTQ 120 QAFVCFRQGF RDLCSDNDAA RHKQEPKPTT RCGCGAEMRV HIHEETGRWI VSYFQEEHNH 180 EMLDDMLTFM LPGHRKMNSA AIDQMNMMLK VVLQSPLHDL ERSAANMLTR EIFLLFRPML 240 SRACTLKIRS CTYTPTFEIY TLSRSGSLHK EWCVSHYPNE EIYKCSCMRM ESLGIPCDHV 300 VAVLVHLDAT KLPKSLVLDR WSKNARSRVH AFMDNGPFCW DAMVTCRNWM LSDLCRELCL 360 LGSAGDAEFS ELRDKFQNEI VLLKEQKKGM QADKERTEPH AESTTLEGCI RNPLICEVLS 420 GVVFVAASGI TGGHVL

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MAGLEDFCAE QEAPLYSEGM NVLHDLDPQE RTLEDVSDCV SDFDEYFGDN FYDDWDNRAI  60
NGIADLQIVK FKEITADQIR RLHFPDRSVA FSFYNLYAKM NGFSARKSRI RRNVNNDVTQ  120
QAFVCFRQGF RDLCSDNDAA RHKQEPKPTT RCGCGAEMRV HIHEETGRWI VSYFQEEHNH  180
EMLDDMLTFM LPGHRKMNSA AIDQMNMMLK VVLQSPLHDL ERSAANMLTR EIFLLFRPML  240
SRACTLKIRS CTYTPTFEIY TLSRSGSLHK EWCVSHYPNE EIYKCSCMRM ESLGIPCDHV  300
VAVLVHLDAT KLPKSLVLDR WSKNARSRVH AFMDNGPFCW DAMVTCRNWM LSDLCRELCL  360
LGSAGDAEFS ELRDKFQNEI VLLKEQKKGM QADKERTEPH AESTTLEGCI RNPLICEVLS  420
GVVFVAASGI TGGHVL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.3K14G

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020991221.1	1e-151	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A444ZTM8	1e-176	A0A444ZTM8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3613	6	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-15	FAR1-related sequence 10