PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aradu.3EK83

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 497aa MW: 57937 Da PI: 5.036

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.3EK83	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.9	5.1e-21	49	138	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YAk+ GFsvrks+s+ +g++ ++t+vCs+eg+r e+ ++ +++ r++++etr+gC kl+v + ++ w+v ++ eHnHel+ Aradu.3EK83 49 EFYNSYAKTRGFSVRKSRSRIV--DGKVREKTYVCSCEGYRFEKWNHmKNRVREPKPETRCGCMSKLHVFFDAvTESWVVRDFCDEHNHELV 138 6***************9998..999**********99988856788899***********9999**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.1E-19	49	138	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.681	240	276	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.9E-4	251	278	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MDEDVTSDAV DMDQYRINSW EDIGKIDFSS LSMKNICQLH FADLGLAFEF YNSYAKTRGF 60 SVRKSRSRIV DGKVREKTYV CSCEGYRFEK WNHMKNRVRE PKPETRCGCM SKLHVFFDAV 120 TESWVVRDFC DEHNHELVVL KYIKSRYDLT EFVQHFQRCL SYMRHREDLA DFKSSTGQPV 180 MQTHFQQLER SAATIYTRQI FVLFRSMLHK ASTLKVIYEE ETSSCNIYQV SKFYKPNMIW 240 HVSFHGEQDE FKCSCMRMDS IGISCSHILA VLGFLDIAEL PKSLVLRRWT RKAKEGISGY 300 DDMGGLMEDS LAINRHACLQ HWCKQIMNEG CLKGDIFNES RDALVNILSC IRAHNGDNNM 360 MEEHAEYMYE DLAKNGSTEI ETTRKPKRCS YCRKGGHNIA TCSMKKMDER TPKFDDDAEE 420 NIEGEDYSFV DAESDEYIHT EWFEEEDEYL DSSRYYEQSG GETASSIDYD SGGADDDDEA 480 ELKVSVTFDP FMYLSFR

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MDEDVTSDAV DMDQYRINSW EDIGKIDFSS LSMKNICQLH FADLGLAFEF YNSYAKTRGF  60
SVRKSRSRIV DGKVREKTYV CSCEGYRFEK WNHMKNRVRE PKPETRCGCM SKLHVFFDAV  120
TESWVVRDFC DEHNHELVVL KYIKSRYDLT EFVQHFQRCL SYMRHREDLA DFKSSTGQPV  180
MQTHFQQLER SAATIYTRQI FVLFRSMLHK ASTLKVIYEE ETSSCNIYQV SKFYKPNMIW  240
HVSFHGEQDE FKCSCMRMDS IGISCSHILA VLGFLDIAEL PKSLVLRRWT RKAKEGISGY  300
DDMGGLMEDS LAINRHACLQ HWCKQIMNEG CLKGDIFNES RDALVNILSC IRAHNGDNNM  360
MEEHAEYMYE DLAKNGSTEI ETTRKPKRCS YCRKGGHNIA TCSMKKMDER TPKFDDDAEE  420
NIEGEDYSFV DAESDEYIHT EWFEEEDEYL DSSRYYEQSG GETASSIDYD SGGADDDDEA  480
ELKVSVTFDP FMYLSFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.3EK83

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015935860.2	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445C5A8	0.0	A0A445C5A8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10649	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-18	FAR1-related sequence 5