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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Aradu.3DJ3B | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 184aa MW: 20962.7 Da PI: 9.9754 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 37.7 | 4.7e-12 | 115 | 158 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
WT +E++l++++ ++lG+ W++I+++ k+R+ q++s+ qk+
Aradu.3DJ3B 115 HWTLQEHKLFLQGYEELGKQ-WSKISSEYVKTRSYSQIVSHSQKF 158
6*****************99.********************9998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 13.917 | 108 | 163 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 2.57E-12 | 109 | 164 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.6E-10 | 112 | 162 | IPR006447 | Myb domain, plants |
| SMART | SM00717 | 3.3E-7 | 112 | 161 | IPR001005 | SANT/Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.1E-7 | 115 | 154 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 4.5E-9 | 115 | 157 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 9.49E-6 | 116 | 154 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 184 aa Download sequence Send to blast |
MTDVNAIKNG NPENMNIMIP LPATSLEHSL LSIPVVNATP PPPPPPPHWT HHQHHRMEVM 60 APAADMPVPM HITLLSSSMS GARREQNQHA NSNIIQHEPL HAASSNNNKR QQTVHWTLQE 120 HKLFLQGYEE LGKQWSKISS EYVKTRSYSQ IVSHSQKFFK RQEKRARGEN LGRKSMLDIT 180 DYST |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Aradu.3DJ3B |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020964712.1 | 4e-40 | uncharacterized protein LOC110265791 | ||||
| Refseq | XP_025672624.1 | 4e-40 | uncharacterized protein LOC112771973 | ||||
| TrEMBL | A0A445EIG2 | 1e-120 | A0A445EIG2_ARAHY; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16350.1 | 7e-16 | MYB_related family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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