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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.35HL5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 150aa MW: 16920.1 Da PI: 8.48 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.6 | 2.9e-08 | 4 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48 + WT eE + + +++ +W++Ia++++ g+t+ q+++r+ k++ Aradu.35HL5 4 QVWTWEENKAFESVITNCFEYakrnSWELIAARLP-GKTPAQLQERFKKLM 53 68*************9875447779**********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.073 | 1 | 53 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.4E-6 | 2 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-6 | 4 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.44E-8 | 5 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.92E-7 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-8 | 16 | 54 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MQPQVWTWEE NKAFESVITN CFEYAKRNSW ELIAARLPGK TPAQLQERFK KLMKDINVIH 60 NGYTSNTPLN TASENMTMIM AAPITTLEHN PVSVPIINAT TTTPPPPPYN TDHQHHRAEV 120 VAAAAPMEAA TREQSQSANT NNTKKYSRWT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.35HL5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020986666.1 | 1e-106 | transcription factor DIVARICATA-like isoform X3 | ||||
TrEMBL | A0A445BGH9 | 2e-82 | A0A445BGH9_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445BGN2 | 2e-82 | A0A445BGN2_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19084 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01200.1 | 1e-07 | MYB family protein |