PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.30S8W

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 288aa MW: 33584.6 Da PI: 7.4726

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.30S8W	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	155.6	2.1e-48	7	126	1	118
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kkv++kk++l +vik+vd+yk+ePwdL++ k+ + ee++wyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++sk Aradu.30S8W 7 VPPGFRFHPTDEELVDYYLRKKVASKKIDL-DVIKDVDLYKIEPWDLQElcKIGSdEENDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSK 103 69**************************.9***********954555553556*********************************** PP NAM 96 kgelvglkktLvfykgrapkgek 118 ++ l+g++ktLvfykgrap+g+k Aradu.30S8W 104 QHCLIGMRKTLVFYKGRAPNGHK 126 ******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.1E-47	5	126	IPR003441	NAC domain
PROSITE profile	PS51005	42.786	7	155	IPR003441	NAC domain
Pfam	PF02365	7.4E-23	8	122	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRKKVA SKKIDLDVIK DVDLYKIEPW DLQELCKIGS 60 DEENDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSKQHCLIGM RKTLVFYKGR 120 APNGHKVFKK KMATVRKIGD YDSPCSWYDE QVPFMQDLES SSPIKPPIIN NNHYASSYNH 180 HQLQLPCKPE FHQPMQYNNM NMPRHDDAAD NNNNFLQLPQ LESPNAGISP FLQQQDPHQL 240 LQQQNSNNSN YHLDQVTDWR VLDKFVASQL MSHGDDDGHN HNNNVSKE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-39	6	127	14	131	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.30S8W

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015963577.1	0.0	NAC domain-containing protein 7-like
Refseq	XP_025702486.1	0.0	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-102	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A445ERB5	0.0	A0A445ERB5_ARAHY; Uncharacterized protein
STRING	XP_007155625.1	1e-119	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-86	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]