PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.2ZT9L
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 662aa    MW: 74367.8 Da    PI: 5.2696
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.2ZT9LgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-0787109427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  ++C ff++ G C  GdrC F Hgp
  Aradu.2ZT9L  87 VPCIFFQK-GLCLKGDRCAFLHGP 109
                  69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156631.3E-7946No hitNo description
PROSITE profilePS5010311.1782248IPR000571Zinc finger, CCCH-type
SMARTSM003560.122447IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-583109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.40883110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.35E-584108IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-487109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-588109IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MNCGDPGGKG NECEYRHSEY ARVNPRDCWY WLNGNCLNPK CAFRHPPLDG LLGSPAATAA  60
GPSVPSSQIA ATPAAPAAPY NSTKQAVPCI FFQKGLCLKG DRCAFLHGPN PTAGNKAVNQ  120
VPVSNQGTET PNLKKPFGSR DKNAQERRSS QGNIPKLVGG LEIKPSPKVE TAPQRNNFEL  180
VKEKHVAPPP AGFDDEASRF KMRSISPVAN GPTAARSNRL HQVRMPDDNS FHNGKDSDEF  240
LRESSPGFDV LVADELRNSD YYHGEDEFGN ARGPDERNLD SLNDYDLGHS ADYGLARDID  300
QERFRVPQSY DSYDHMQEPY AWEQHRKAPG HLERRSHRRS DSPDNVEVSD LRHRLSKRRR  360
VNGLKSVVSN DFDSHGDQQS HHSRKDSHQL PLNDRFRGRI KLPASGADDN PERESDRGRI  420
RSRLSTGRLP TPHQGRLQDR IRGRVQDDER RNFRERSIGR EVMGDRSDFS GPKSLAELKN  480
GRSSDYKEHQ SLGKRKSLRE QSQSEGDFQF DGPKPLSEIL KEKRRVGAGV SSQSEIVHSS  540
DDTAVTNMQN GALPEAKEGA KNHSLINEEE TKLQDTDTAG REIDNNEGNR DQSYEDGMIY  600
DEAAEEQEYE GDDQRDGEYD YEQVDEGEYD YEQVDEGENP EQEYMEDEDG DDFAKKIGVM  660
TT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356360KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.2ZT9L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015957938.10.0zinc finger CCCH domain-containing protein 17
TrEMBLA0A445DLT50.0A0A445DLT5_ARAHY; Uncharacterized protein
STRINGXP_004504622.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF92273137