PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.2X0TU
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 587aa    MW: 65147.4 Da    PI: 6.4628
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.2X0TUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS427.79.2e-1312175861373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cAea+++g+++  ++l+++ +  +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    ++ l+++++++e++P+lkf++++a
  Aradu.2X0TU 217 LKQLLVACAEAMADGNMNDFDQLISKAKGAVSITGEPLQRLGAYMVEGLVARKEASGTGIYRALKCREPE---GKDLLSYMQMLFEICPYLKFGYMAA 311
                  689******************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea   e+++HiiDf+i qG+QW++LlqaLa+Rp+gpp++RiTg+++p s   + e le +g+rLa + e++++p+ef+  v     d++ ++L
  Aradu.2X0TU 312 NGAIAEACRDEDHIHIIDFQIAQGTQWMTLLQALAARPRGPPHVRITGIDDPVSRyaRGEGLEVVGKRLAMMSEKFRIPVEFHG-VPVYAPDVTRDML 408
                  ****************************************************999999**************************.688999******* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  ++++gEalaVn+ lqlh++ desv+++++rd +L+lvkslsPkvv++veqe+++n+++F++rf+e+l+yy a+f+s++++lpr+s+eri+vE+++l+r
  Aradu.2X0TU 409 NIRSGEALAVNFPLQLHHTADESVDVNNPRDGILRLVKSLSPKVVTLVEQESNTNTTPFFNRFMETLDYYLAIFESIDVTLPRNSKERINVEQHCLAR 506
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  +ivn+vaceg+er+erhe ++kW++rl++aGF++ pls+++++ +++llr ++ + y++ e++g+++l Wk+r+L+s+SaW
  Aradu.2X0TU 507 DIVNIVACEGKERVERHELFGKWKSRLTMAGFRQCPLSSYVNSVIRSLLRCYS-EHYSLVEKDGAMLLAWKNRNLISASAW 586
                  *************************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.623191568IPR005202Transcription factor GRAS
PfamPF035143.2E-128217586IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MDSQQLYSFG VTSAGLPYIP SFPTIPSSQP NRLLGSLKFD TGNSPNSPFS THFDSDTLSA  60
FSDSQDQQHS PGEILSGVST SCNSPFETNH YLHTSVSSAD SNRGSFQLYS ARSSLLQNAN  120
CNQKIRNVLL ELESALMAPD EEEVTTSNAS MVESSGPTTS GQRNRSWSHD HYGSQFVQSQ  180
GSYVTGSRQT SEFEHVMKRQ KSIVEASSPP GFPSGNLKQL LVACAEAMAD GNMNDFDQLI  240
SKAKGAVSIT GEPLQRLGAY MVEGLVARKE ASGTGIYRAL KCREPEGKDL LSYMQMLFEI  300
CPYLKFGYMA ANGAIAEACR DEDHIHIIDF QIAQGTQWMT LLQALAARPR GPPHVRITGI  360
DDPVSRYARG EGLEVVGKRL AMMSEKFRIP VEFHGVPVYA PDVTRDMLNI RSGEALAVNF  420
PLQLHHTADE SVDVNNPRDG ILRLVKSLSP KVVTLVEQES NTNTTPFFNR FMETLDYYLA  480
IFESIDVTLP RNSKERINVE QHCLARDIVN IVACEGKERV ERHELFGKWK SRLTMAGFRQ  540
CPLSSYVNSV IRSLLRCYSE HYSLVEKDGA MLLAWKNRNL ISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6322458626378Protein SCARECROW
5b3h_A2e-6322458625377Protein SCARECROW
5b3h_D2e-6322458625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.2X0TU
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936502.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A445BXZ90.0A0A445BXZ9_ARAHY; Uncharacterized protein
STRINGXP_004487630.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-170scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]