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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.2V4EQ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 313aa MW: 35485.3 Da PI: 5.0037 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.1 | 4.1e-29 | 79 | 139 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 ++Dgy+WrKYGqK++ g++fpr+Y+rCt++ gC ++k+v++s+edp+v+eitY+g+H++ Aradu.2V4EQ 79 MEDGYSWRKYGQKDILGAKFPRGYFRCTHRhvqGCLATKQVQKSDEDPNVLEITYKGRHTC 139 58***************************99999*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-27 | 75 | 140 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-24 | 78 | 139 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.9E-41 | 79 | 141 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.31 | 79 | 137 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-26 | 80 | 139 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MEQILSTYEK VLTMLSNTNF MKDSSHCSSS SLANGSTKSE VLDKEDVAKH KQVSKKRKTM 60 SMWTKQVRVC LGTELDGSME DGYSWRKYGQ KDILGAKFPR GYFRCTHRHV QGCLATKQVQ 120 KSDEDPNVLE ITYKGRHTCI QVSHHSKNPT ISKPNMALLL EEQPKNHQPT QKEMKTEQPT 180 HETILTFGTS QELEVKLDDF DFDFDPDTKE NIFSSLCFTS PSIVSENDED NNKMFSYIES 240 FSPEFISPTT NSESNNIFHF NDGLGLCVQT SDSDFSDNVS APTSSVSNSS IEGLDFHSFD 300 EKVDFDNYYS INS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-20 | 81 | 137 | 18 | 74 | Disease resistance protein RRS1 |
5w3x_D | 2e-20 | 81 | 137 | 18 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.2V4EQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015937960.1 | 0.0 | probable WRKY transcription factor 46 | ||||
TrEMBL | A0A445AC12 | 0.0 | A0A445AC12_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA16G02960.1 | 1e-94 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 9e-41 | WRKY DNA-binding protein 30 |