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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.2SS2B | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 748aa MW: 81760.4 Da PI: 6.9262 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.3 | 1.3e-32 | 270 | 327 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ d++++ei+Y+g+Hnh+k Aradu.2SS2B 270 EDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSH-DGQITEIIYKGTHNHSK 327 7****************************************.***************85 PP | |||||||
2 | WRKY | 104.1 | 7.7e-33 | 483 | 541 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagCpv+k+ver+++++k+v++tYeg+Hnhe Aradu.2SS2B 483 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERASHNTKYVITTYEGKHNHE 541 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-28 | 260 | 328 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.835 | 264 | 328 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.07E-25 | 267 | 328 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.9E-36 | 269 | 327 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-25 | 270 | 325 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.0E-36 | 468 | 543 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-28 | 476 | 543 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.734 | 478 | 543 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-38 | 483 | 542 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-25 | 484 | 541 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence Send to blast |
MDSDSKGGIF PAFPVKRSIA ERRGFNSNAA RINTARFRTN TITTSPLASP SPSSCSASPC 60 ITIPPGISPT ALLDSPIMLP NSQILSCWVC CVYLFIYFSF FFAMPSPTTG SFHWLSSLPL 120 DQGNLNDAPD SSLKFKNNAT LADPNPLPPY SASLNQVSSN WHMVKGGNTD CQSIVPVLPP 180 IDFSFPEDFS KGQNAKIIES RSFNDVKMVN CSLVNVNKVE MMQISRSDEA GDESTLPKNV 240 TLGGDIGRQP VMEKDQKETL LATGVVRTSE DGYNWRKYGQ KQVKGSEYPR SYYKCTQPNC 300 QVKKKVERSH DGQITEIIYK GTHNHSKPHL GRRASGLSTD EMSDMGEAGE NYAKLEGSGW 360 KNVQPGAKDT KHGLDWKADG LERTSSTSVV TELSDPMSTN KGKPLCAFEA EDTPEHSSTL 420 ASNDGDEDGT TQALAPAEDD AEDDESDSKR RKKENYLVES TLPSRAVREP RVVVQIETEI 480 DILDDGYRWR KYGQKVVKGN PNPRSYYKCT SAGCPVRKHV ERASHNTKYV ITTYEGKHNH 540 EVPTARTNNH VSSNDGGLPP SGPNGQSALA LPGSAVIPKS ENHQTLTSHF DRKPEFGSDF 600 LRPSLVGAFS NNLKFGSSPM CQMKYPSLSS TMPYSSFGLN PDRCTAPQAG SIPSVYPDFP 660 MPLPLNLPSS GNFSLAGLNF NCAKPMNPVQ PFLSGQQVKD IDTGFLRPKQ EQKDDAIYGT 720 CLPPVDHGNS SSAAPSSIYQ QVMQNFPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-32 | 262 | 543 | 5 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-32 | 262 | 543 | 5 | 77 | Probable WRKY transcription factor 4 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.2SS2B |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015962000.1 | 0.0 | WRKY transcription factor SUSIBA2-like | ||||
TrEMBL | A0A444ZR12 | 0.0 | A0A444ZR12_ARAHY; Uncharacterized protein | ||||
STRING | XP_007139725.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8349 | 34 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-84 | WRKY DNA-binding protein 2 |