PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.2K11I | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HSF | ||||||||
Protein Properties | Length: 416aa MW: 46874.5 Da PI: 6.2487 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 102.5 | 3.8e-32 | 29 | 147 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.TEEE---SSBTTTT................XTTSEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.gFkkvkdeekksks................kekiweF 81 Fl+k++++++d++l+++isw ++g sfvv+d+ ef++ vLp+ Fkh+nf+SFvRQLn+Y F++++++ ++ +++ weF Aradu.2K11I 29 FLSKTFDLVDDPSLDTIISWGSTGASFVVWDPMEFSRLVLPRNFKHNNFSSFVRQLNTYiAFSNTDSSAHNLVCqenllvgvciqgfrkiDTDKWEF 125 9**********************************************************668888777765443788998888877765449***** PP EESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 82 khksFkkgkkellekikrkkse 103 ++ F++gkk+ll++i+r++s+ Aradu.2K11I 126 FNEAFQRGKKHLLKNIQRRRST 147 *******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 2.45E-29 | 24 | 144 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.3E-44 | 25 | 144 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 6.5E-34 | 26 | 144 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.1E-28 | 29 | 144 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-12 | 29 | 52 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-12 | 67 | 79 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-12 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MKKPNEEPKA GDVHNRPLEC LHGNPVPPFL SKTFDLVDDP SLDTIISWGS TGASFVVWDP 60 MEFSRLVLPR NFKHNNFSSF VRQLNTYIAF SNTDSSAHNL VCQENLLVGV CIQGFRKIDT 120 DKWEFFNEAF QRGKKHLLKN IQRRRSTQSQ QVGSHIGTSI DAGRPGLEVE IELLRKERSM 180 LMQEVVDLQQ QQRRTVHHAG EVNQRLESAE QRQKQMVSFL AKLFQNPAFL ARLRDKKEQR 240 QIESPKARRK FIKHQHEAGN SETPKGQVVR YQPDWKNRTV SSETPELNPV SFEQSPQYLS 300 QDLAREISVG AENLTLQLDK IMSDELGALH EAMPTPGILE DAWDPAFNAS VAASSCGNEL 360 WGNPVNHGVP EFGGTSGVSD IWDIGSGSLG IDKWPADESP MDKKESQGGQ PEDDRP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-19 | 26 | 149 | 17 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 230 | 238 | ARLRDKKEQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.2K11I |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025634985.1 | 0.0 | heat stress transcription factor A-3-like isoform X1 | ||||
Refseq | XP_025663513.1 | 0.0 | heat stress transcription factor A-3-like isoform X1 | ||||
TrEMBL | A0A1S3UYB2 | 1e-172 | A0A1S3UYB2_VIGRR; heat stress transcription factor A-3 | ||||
STRING | XP_007145255.1 | 1e-167 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8782 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 1e-97 | heat shock transcription factor A3 |