PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.2C47B
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 297aa    MW: 33508.2 Da    PI: 4.8012
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.2C47BgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.62.8e-25107198190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fYn+YAk+ GFs r+sk +++  ng +t++ fvC ++g+re ++ +  ++++r++++etr+gC+a+++v+ +  +g+w vt +++ HnHe+ 
  Aradu.2C47B 107 SFYNFYAKMNGFSARRSKLRRN-VNGDVTQQSFVCFRQGFREVKSYDesSQRKREPKPETRCGCQAEMRVHVHIdTGRWIVTYFQEVHNHEML 198
                  5******************999.8888**************999887667888899***************9988***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-22107198IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAQAGEEAYF NHNDVSLEGE ALPSYLPDHG NEFCDDGSYF CDAEEPLSDE GMDVDSEAED  60
FSDDNFYENW DGRSIDGIAD VGSLNLKSLT VDEIKLLHFP DLNVAFSFYN FYAKMNGFSA  120
RRSKLRRNVN GDVTQQSFVC FRQGFREVKS YDESSQRKRE PKPETRCGCQ AEMRVHVHID  180
TGRWIVTYFQ EVHNHEMLAD ELTFMLPGHR KMDASAIDQM NMMLKVGIKT PQIYASFVNT  240
AGGFHNTGIV LAKSQSHSAM HIPLHVQHFG SGQQSTPYQP HGEADSASPR LEVTMIP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.2C47B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020982272.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A444X5Y41e-149A0A444X5Y4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-18FAR1-related sequence 5