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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.29A27 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 222aa MW: 25467.4 Da PI: 10.8008 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.7 | 1.1e-09 | 44 | 90 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRR riN+ +e L+ l + +K +Ka+ L ++e +k+L Aradu.29A27 44 VKHSQAEKRRRMRINTQYEALKNLFQNK-----TKTDKASLLATTIEIVKNL 90 58**********************9988.....9***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.66E-10 | 34 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.67E-6 | 39 | 92 | No hit | No description |
PROSITE profile | PS50888 | 12.735 | 41 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-9 | 44 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.5E-7 | 44 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0068 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 7.85E-6 | 144 | 209 | No hit | No description |
PROSITE profile | PS51671 | 8.956 | 145 | 222 | IPR002912 | ACT domain |
Gene3D | G3DSA:3.30.70.260 | 2.6E-5 | 146 | 209 | No hit | No description |
CDD | cd04873 | 1.65E-5 | 147 | 211 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MGMQRVRNHY YSGAQILRSS SITPYDYIFT KPRSKAADKK QAAVKHSQAE KRRRMRINTQ 60 YEALKNLFQN KTKTDKASLL ATTIEIVKNL RKNSILQEAS SSSKKEMNKV TNQKKMQEAC 120 SPRNDDVFPS WEDKWSLKHE EDLMKATLNC EDKPGLMSTI AKAMGSVEAK VVKAEMVNVG 180 GRTRVVLWVK DSNGDRKGEE ILKRTLSTLM QRPVPKKRRF TQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.29A27 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020997511.1 | 1e-163 | transcription factor bHLH131 | ||||
TrEMBL | A0A444WW39 | 1e-160 | A0A444WW39_ARAHY; Uncharacterized protein | ||||
STRING | XP_004489760.1 | 5e-56 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12611 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 9e-31 | bHLH family protein |