PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.25NPV

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 412aa MW: 44922.1 Da PI: 8.3956

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.25NPV	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.4e-09	207	254	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Aradu.25NPV 207 SHSLAERVRREKISERMKFLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 254 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.11E-17	201	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.05E-11	201	258	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.3E-17	203	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.586	203	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-7	207	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.1E-9	209	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MLHCLNSNAS GSEMTVLERQ RATIKWQHNN NHHQGYSSSS SPSPSSSSSI SLVQVQSSSP 60 TCLAAGAWPK LDNNFLMGFT SSPSSGFPLP PPPPPTTSAA SFDLNSAISR TSSCPLPSLA 120 EGKETTTPNN KRKTDKFHNT KVVASDNDNK DKRVKVAAPN DSATVGKKGT QACGDNSNKD 180 NSKVSEVQNQ KPDYIHVRAR RGQATDSHSL AERVRREKIS ERMKFLQDLV PGCNKITGKA 240 GMLDEIINYV QSLQRQVEFL SMKLAAVNPR LDFNMDDLFT REVFPACAAS FPAIEMSPNM 300 ANTASYLHFN SSQQIDAGIN PQDISLRRTI SAPVSAPETF LDSSCFTQTL PSSTWEGDFQ 360 NLYSVAFDQA RAASFPSQLF TGSQQIVSCQ NHFSPLSLIS LKQKVKAEES GY

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MLHCLNSNAS GSEMTVLERQ RATIKWQHNN NHHQGYSSSS SPSPSSSSSI SLVQVQSSSP  60
TCLAAGAWPK LDNNFLMGFT SSPSSGFPLP PPPPPTTSAA SFDLNSAISR TSSCPLPSLA  120
EGKETTTPNN KRKTDKFHNT KVVASDNDNK DKRVKVAAPN DSATVGKKGT QACGDNSNKD  180
NSKVSEVQNQ KPDYIHVRAR RGQATDSHSL AERVRREKIS ERMKFLQDLV PGCNKITGKA  240
GMLDEIINYV QSLQRQVEFL SMKLAAVNPR LDFNMDDLFT REVFPACAAS FPAIEMSPNM  300
ANTASYLHFN SSQQIDAGIN PQDISLRRTI SAPVSAPETF LDSSCFTQTL PSSTWEGDFQ  360
NLYSVAFDQA RAASFPSQLF TGSQQIVSCQ NHFSPLSLIS LKQKVKAEES GY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.25NPV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020983607.1	0.0	transcription factor bHLH63 isoform X2
TrEMBL	A0A445CFS0	0.0	A0A445CFS0_ARAHY; Uncharacterized protein
STRING	XP_007136166.1	1e-129	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3618	34	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	4e-63	cryptochrome-interacting basic-helix-loop-helix 1