![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aradu.259PC | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 366aa MW: 41925.6 Da PI: 5.6472 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.1 | 1e-29 | 130 | 190 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK++ g+++prsYYrCt++ gC+++k+v+rs+edp++++itY+g+H+++ Aradu.259PC 130 EDGYNWRKYGQKDILGAKYPRSYYRCTFRntqGCWATKQVQRSDEDPTIFDITYKGRHTCS 190 8**************************998889**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.779 | 124 | 187 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.4E-29 | 126 | 191 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-26 | 128 | 191 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-41 | 129 | 191 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.2E-27 | 130 | 189 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 366 aa Download sequence Send to blast |
MENDGRWEQN ILINELVQGM EVARRLKEDM NATYSADTKD LLLQRILSSY EKALLILRWN 60 ASTSKSQNMS QATATATLFS ESPISISASP LREDNHNQEF KHDSKKRKTM AKWVDQVRVS 120 FESGLEGPHE DGYNWRKYGQ KDILGAKYPR SYYRCTFRNT QGCWATKQVQ RSDEDPTIFD 180 ITYKGRHTCS QGNKAVPQPK SPDKHEQLQC HSNEIQHRQT SEESLTTFGT IMTVKRDMVA 240 NGEMEYPFTF PSTSFGSMAQ ESYSLIPSAL ENESFLSSHF QTHLLYPNMQ EFKYLPSTSF 300 QMNELDGIYN RPLSESDITE IISTNTSTTN SPVPEFNFSL DPVEIDPNFP PNTLDFSPRA 360 LNNKNI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-18 | 131 | 187 | 18 | 74 | Disease resistance protein RRS1 |
5w3x_D | 4e-18 | 131 | 187 | 18 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Aradu.259PC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015955657.1 | 0.0 | probable WRKY transcription factor 41 | ||||
Refseq | XP_025689163.1 | 0.0 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A445DUA9 | 0.0 | A0A445DUA9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA05G36970.1 | 1e-179 | (Glycine max) | ||||
STRING | GLYMA08G02580.1 | 1e-179 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11070.1 | 3e-64 | WRKY family protein |