PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aradu.23V4H

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 423aa MW: 48045.9 Da PI: 8.928

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.23V4H	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.2	2.4e-17	11	97	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++k+ +ei+++ +Cs+e kr+ + ++ +++t +C a++ ++ +k g w ++k++l+H+H+++p Aradu.23V4H 11 KFYKNYAKAAGFSTRVRSTNKK--GNEIKNQLITCSREEKRKYKIFP---IEKINPTTGLNCPARIYIHTMKdVGAWIISKVVLHHSHPCCP 97 6**************98887..8889**********99877...89999************999*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-14	11	97	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.371	222	258	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-4	232	255	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-4	233	260	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MTSSTLEDTT KFYKNYAKAA GFSTRVRSTN KKGNEIKNQL ITCSREEKRK YKIFPIEKIN 60 PTTGLNCPAR IYIHTMKDVG AWIISKVVLH HSHPCCPTQT EMLEQHRELS MSICRTTENN 120 EEAGHKGARA CSHFLTSLLP EMDHLSNLSN NTIIASEAGS RERESDAVDF HTVIPCATKS 180 SIEALFQHVG KVNCSTRLTN SALGYLVYEV GEEVSSLIFN KFAVTYNSIA AQVKCQCLLF 240 ESKGILCRHV LSVLIFERVT QVSPRYILER WSKKVKRHNE PLLEPRSKRF DELVFHSQNI 300 CKFASESEEL TAILHRAYDN IMVEMEELKA KRKGTCSLSH EDANLESVNE LQSPPRVRTI 360 GRPKNRLDCN TSKKKKTKAL SELNLFDAAS VLQANSSQYH RHVMNYQFRE PAIGDNAAIY 420 VRN

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MTSSTLEDTT KFYKNYAKAA GFSTRVRSTN KKGNEIKNQL ITCSREEKRK YKIFPIEKIN  60
PTTGLNCPAR IYIHTMKDVG AWIISKVVLH HSHPCCPTQT EMLEQHRELS MSICRTTENN  120
EEAGHKGARA CSHFLTSLLP EMDHLSNLSN NTIIASEAGS RERESDAVDF HTVIPCATKS  180
SIEALFQHVG KVNCSTRLTN SALGYLVYEV GEEVSSLIFN KFAVTYNSIA AQVKCQCLLF  240
ESKGILCRHV LSVLIFERVT QVSPRYILER WSKKVKRHNE PLLEPRSKRF DELVFHSQNI  300
CKFASESEEL TAILHRAYDN IMVEMEELKA KRKGTCSLSH EDANLESVNE LQSPPRVRTI  360
GRPKNRLDCN TSKKKKTKAL SELNLFDAAS VLQANSSQYH RHVMNYQFRE PAIGDNAAIY  420
VRN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.23V4H

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015954109.1	1e-142	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445CBN3	0.0	A0A445CBN3_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-12	far-red elongated hypocotyls 3