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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.1AC2T | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | CPP | ||||||||
Protein Properties | Length: 707aa MW: 77170.1 Da PI: 6.6039 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.9 | 3.1e-16 | 455 | 493 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk Aradu.1AC2T 455 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 493 689**********************************96 PP | |||||||
2 | TCR | 50.7 | 3.5e-16 | 540 | 578 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN Aradu.1AC2T 540 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 578 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.5E-18 | 454 | 495 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.706 | 455 | 580 | IPR005172 | CRC domain |
Pfam | PF03638 | 9.5E-12 | 457 | 492 | IPR005172 | CRC domain |
SMART | SM01114 | 4.4E-17 | 540 | 581 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-11 | 542 | 578 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MDTPDRATTT NNLNPPKFED SPVFNFLNSL SPIKPVKSVH ITQTFSSISF SSPPSVFTSP 60 HVNSNKESRF LRRHNLLDTS KPKVTSEDEN QTGSAEQALT DSTHAHNNSR ELEKNADKGT 120 SIGDASIEPA SEQAKFSIEL PQTLKYESGS PGYDPILCGD EANTLLSLPS SEAAQDVACS 180 HESSKKNLVE GELHLHGICQ TEPKIDGTEC DWDNLINNAS DMLIFSSPNV SEAFKDLMNK 240 QLDPSGRIMQ IVNQVASGSG HENEDHPPKP GLASDTQYTQ ENIANVALVA SNPCEKMDDE 300 HVYVIHRGIR RRCLDFEMAS VRRNNSDGNS NASSNATKSD ERNTGGDSRR CFLPGIGLHL 360 NALATLKEHR GMKNEKSSSG RQLNIPSSTS SLLPQEHHLL LLPASSERDM ELPENEVQPV 420 DDCSQSLSLM AGEEFNQNSP KKKRRKVETA GESESCKRCN CKKSKCLKLY CECFAAGVYC 480 IEPCSCQDCF NKPVHEDTVL QTRKQIESRN PLAFAPKVIR SSDSVSEIAD DPNKTPASAR 540 HKRGCNCKKS SCLKKYCECY QGGVGCSISC RCEGCKNAFG RKDGSAGIDA EAEEETEASE 600 KGEGKPPRSF IATISGSALI ASQKLGKPNI LRPQVKLEKP HQTVADDEMM DIIQGDSSPI 660 ACIKTSSPNG KRISSPNCEL GSSPTRRGGR KLILHSIPSF PSLTHHH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 8e-18 | 457 | 577 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 8e-18 | 457 | 577 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 440 | 444 | KKKRR |
2 | 440 | 445 | KKKRRK |
3 | 441 | 445 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.1AC2T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB378645 | 1e-163 | AB378645.1 Lotus japonicus CPP-L56 mRNA for transcription factor CPP, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015941548.1 | 0.0 | protein tesmin/TSO1-like CXC 2 isoform X3 | ||||
TrEMBL | A0A445BFP9 | 0.0 | A0A445BFP9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G44670.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2619 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-104 | TESMIN/TSO1-like CXC 2 |