PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.18EWZ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 146aa MW: 16477.5 Da PI: 7.272 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34 | 6.6e-11 | 14 | 51 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l++++k +G g + R++k+c++rw +yl Aradu.18EWZ 14 KGAWTKEEDERLINYIKIHGEG----------LLRCGKSCRLRWINYL 51 79******************99..........689***********97 PP | |||||||
2 | Myb_DNA-binding | 21.5 | 5.4e-07 | 57 | 78 | 1 | 22 |
TSSS-HHHHHHHHHHHHHTTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg 22 rg++T+eEdel+++++ +lG++ Aradu.18EWZ 57 RGNFTEEEDELIINLHSLLGNN 78 89******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-16 | 5 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.316 | 9 | 55 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-7 | 13 | 53 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-8 | 14 | 51 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.48E-17 | 15 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.68E-8 | 16 | 51 | No hit | No description |
PROSITE profile | PS50090 | 4.913 | 52 | 97 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-10 | 55 | 78 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3 | 56 | 115 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MGRSPCCEKE HTNKGAWTKE EDERLINYIK IHGEGLLRCG KSCRLRWINY LRPDLKRGNF 60 TEEEDELIIN LHSLLGNNTN IINDNNNNKF QLVSELVCED SSNSSSGFQS NNNKVCSCKG 120 AIVGGTAVTT TAADNSLYRF YRPMNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-15 | 13 | 77 | 26 | 99 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.18EWZ |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 5e-37 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015937713.1 | 2e-47 | myb-related protein 308 | ||||
Refseq | XP_024021415.1 | 8e-48 | myb-related protein 330 | ||||
Refseq | XP_025615910.1 | 2e-47 | myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 2e-45 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A446R510 | 3e-47 | A0A446R510_TRITD; Uncharacterized protein | ||||
TrEMBL | B9RHN0 | 3e-46 | B9RHN0_RICCO; R2r3-myb transcription factor, putative | ||||
TrEMBL | M8A654 | 3e-47 | M8A654_TRIUA; Transcription repressor MYB4 | ||||
STRING | XP_006466200.1 | 1e-46 | (Citrus sinensis) | ||||
STRING | XP_002513249.1 | 5e-47 | (Ricinus communis) | ||||
STRING | TRIUR3_28515-P1 | 5e-48 | (Triticum urartu) | ||||
STRING | XP_006426418.1 | 1e-46 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28707 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 9e-45 | myb domain protein 4 |