PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.17BB2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HSF | ||||||||
Protein Properties | Length: 177aa MW: 20887.8 Da PI: 10.0251 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 64.4 | 2.6e-20 | 2 | 81 | 15 | 91 |
GTTTSEESSSS....SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 15 lkeliswseng....nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 +++++sw ++g +sfvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Y + ++ k k + weF+++ +++++ Aradu.17BB2 2 TDHIVSWGHDGhstsSSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYHHFVLLKQGFK-KVVADRWEFANDDHHQHNH 81 689****9887777799*********************************75555544443.567999****999766554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.0E-16 | 2 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 7.7E-22 | 2 | 80 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.18E-16 | 2 | 80 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 4.1E-17 | 2 | 80 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-5 | 31 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.0E-5 | 44 | 56 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MTDHIVSWGH DGHSTSSSFV VWRPPEFARD LLPNYFKHNN FSSFVRQLNT YHHFVLLKQG 60 FKKVVADRWE FANDDHHQHN HILAALSEDN QRLRRKNLML LSELTHMKNL YNDIIYFIQN 120 HLKPASSPFH HNQTTIPKLV ELDYSSPKGS RMMMMKLFGV PLSGKKRLHP DNIFQQD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.17BB2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003617219.1 | 1e-67 | heat stress transcription factor B-4b | ||||
Swissprot | Q7XHZ0 | 4e-30 | HFB4B_ORYSJ; Heat stress transcription factor B-4b | ||||
TrEMBL | G7KCV7 | 3e-66 | G7KCV7_MEDTR; Heat shock transcription factor | ||||
STRING | AET00178 | 5e-67 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1612 | 33 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 4e-31 | heat shock transcription factor B4 |
Publications ? help Back to Top | |||
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