PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.175L2
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 218aa    MW: 24752.3 Da    PI: 8.9005
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.175L2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.9e-131960145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     rg W + Ede+l ++v+q+G  +W++Ia++++ gR+++  k++w+
      Aradu.175L2 19 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGN--KNHWH 60
                     899*****************************.****6..78887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.2311467IPR017930Myb domain
SMARTSM007172.8E-81865IPR001005SANT/Myb domain
SuperFamilySSF466895.02E-101867IPR009057Homeodomain-like
PfamPF002491.5E-111959IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-142067IPR009057Homeodomain-like
CDDcd001678.30E-112260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEDSSNNNNT CEDTKICPRG HWRPAEDEKL RQLVEQYGAQ NWNSIAEKLQ GRSGNKNHWH  60
VIMARKQREQ SKICGKRTFQ DMMIFNNNNN DSNSSSSSSN IIKRPARVIG LEYSRFFDFR  120
NLDSNKASTS WNFASSVPPV TDSFRKGGGG GKDYFTINGS SIYLPEGSRT SDRFYCRRIV  180
PNPFAFKGSS TEKEKEEDHE PKNEVPFIDF LGVGVSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.175L2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015934411.11e-144uncharacterized protein LOC107460551
TrEMBLA0A445BSY71e-130A0A445BSY7_ARAHY; Uncharacterized protein
STRINGGLYMA04G42110.22e-54(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2870222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.12e-19myb domain protein 69