PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.13D06

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 396aa MW: 45253.2 Da PI: 7.4018

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.13D06	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160.3	7.3e-50	53	178	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + +++ + Aradu.13D06 53 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRS 149 79*************************.89***********8778899**************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy+g+apkg +t+W+m+eyrl Aradu.13D06 150 IGLKKTLVFYSGKAPKGIRTSWIMNEYRL 178 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.804	52	199	IPR003441	NAC domain
SuperFamily	SSF101941	3.53E-55	52	198	IPR003441	NAC domain
Pfam	PF02365	3.9E-25	54	178	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MAIAAPNSSP TMSLSHSHSH EDGGTTTAAS TTNDNLNGNG KQEDDDHEHD MVMPGFRFHP 60 TEEELVEFYL RRKVEGKRFN VELITFLDLY RYDPWELPAL AAIGEKEWYF YVPRDRKYRN 120 GDRPNRVTTS GYWKATGADR MIRTENFRSI GLKKTLVFYS GKAPKGIRTS WIMNEYRLPQ 180 HETERYQKAE ISLCRVYKRA GVEDHPSLPR CLPTRAPSSR TVDHQKNKQQ HHNDQLNMGF 240 AGNTADGASD NRDHDVTTAL ALSKHNTNAY RAPSMGLPPL LLPLDDEAAF VLMQQQQHHA 300 GPSSGTTTMM DDLNRLVSYQ HQYYNSSSSS SNNNNPNHHH HLLMQQQQQQ QQQTPPAIMS 360 LNNTPSPLAT AFSDRLWEWN PLPEANQRQY SNMSFK

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MAIAAPNSSP TMSLSHSHSH EDGGTTTAAS TTNDNLNGNG KQEDDDHEHD MVMPGFRFHP  60
TEEELVEFYL RRKVEGKRFN VELITFLDLY RYDPWELPAL AAIGEKEWYF YVPRDRKYRN  120
GDRPNRVTTS GYWKATGADR MIRTENFRSI GLKKTLVFYS GKAPKGIRTS WIMNEYRLPQ  180
HETERYQKAE ISLCRVYKRA GVEDHPSLPR CLPTRAPSSR TVDHQKNKQQ HHNDQLNMGF  240
AGNTADGASD NRDHDVTTAL ALSKHNTNAY RAPSMGLPPL LLPLDDEAAF VLMQQQQHHA  300
GPSSGTTTMM DDLNRLVSYQ HQYYNSSSSS SNNNNPNHHH HLLMQQQQQQ QQQTPPAIMS  360
LNNTPSPLAT AFSDRLWEWN PLPEANQRQY SNMSFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-57	40	199	5	165	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-57	40	199	5	165	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-57	40	199	5	165	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-57	40	199	5	165	NO APICAL MERISTEM PROTEIN
4dul_A	7e-57	40	199	5	165	NAC domain-containing protein 19
4dul_B	7e-57	40	199	5	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00257	DAP	Transfer from AT2G02450	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.13D06

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015940149.1	0.0	NAC domain-containing protein 35
Swissprot	Q9ZVP8	1e-119	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A445AYB7	0.0	A0A445AYB7_ARAHY; Uncharacterized protein
STRING	GLYMA17G00650.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7203	31	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-113	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]