PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

GRAS

Protein Properties

Length: 702aa MW: 78551.9 Da PI: 6.1453

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.10YFM	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	369.4	4.7e-113	334	699	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL++cA+av+s d++ a+++L+++++++ +gd +qRla+yf+ +L++rla ++ k + +++s ++ l+a+k++ + P+ ++s+++aN+ Aradu.10YFM 334 SLLTQCAQAVASYDQRSANEILKQIRQNSPASGDGLQRLAKYFADGLESRLAA---GTPKYILLQSAS---AADMLKAYKVYITAIPFQRMSNFLANR 425 79************************************************9...444444444444...789******************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 +Il+ +++e+ +HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+rL+++++++gvpfe+n +a+++e+++le+L++ Aradu.10YFM 426 TILKLAQNESSLHIIDFGIFYGFQWPCLIQRLSERPGGPPRLRITGIDLPQPGfrPAERVEETGRRLKNYCKRFGVPFEYNC-LAQKWETIQLEDLNI 522 ************************************************9*************************.6********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +++E+++Vn+ ++l++l de+v+ + +rd+vL+l+++++P+++++ + +n++ Fl+rf eal ++salfd++ea++pr++ +r + E+ l+gr++ Aradu.10YFM 523 DRNEVTVVNCLYRLKNLSDETVTANCPRDAVLRLIRRINPNIFIHGVVNGTYNAPFFLTRFREALFHFSALFDMFEATVPRDNPHRLMFEQGLFGRDA 620 ********************************************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 nv+acegaer+er et+++W+ r ++aGFk++++ + + +k +++k + + + v+e+ +++++gWk+r L ++S W Aradu.10YFM 621 INVIACEGAERVERPETYKQWQVRNRRAGFKQLAIAPELLNRVKGMVKKEYHKDFVVDEDGKWVLQGWKGRILHALSPW 699 ***********************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.634	306	680	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-110	334	699	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence Send to blast
MKFLCLEAIM ISADSRTENY TGFVYENGPM SVFSNSNNHQ NPGNVFKFED SSSNHAESPT 60 SDDPDGTNNG ESHAESTKNS NPILRYISEI LLDEEDDLQQ KPCMLHDCLK LQAAEKGFYD 120 AIGRSYPSSP SKIYGGFGDD CHDPDDSNFG RTTSSESNSS SYNTSENSCE SDWFNGWGDF 180 ESKFLQNSLI ESPEIKNSYE VLGLGNSQIR DSHGSVYFQN GTLHNIIPDM LPPITGGGSG 240 RSREKRSHHV DDGTQEGERG NKLSAVYADE SEPLEMFDAV LLCQDGKSPA IFCGDRESDS 300 GGSNVKASRS KKGANKGGAT NKGGTISTTV DLWSLLTQCA QAVASYDQRS ANEILKQIRQ 360 NSPASGDGLQ RLAKYFADGL ESRLAAGTPK YILLQSASAA DMLKAYKVYI TAIPFQRMSN 420 FLANRTILKL AQNESSLHII DFGIFYGFQW PCLIQRLSER PGGPPRLRIT GIDLPQPGFR 480 PAERVEETGR RLKNYCKRFG VPFEYNCLAQ KWETIQLEDL NIDRNEVTVV NCLYRLKNLS 540 DETVTANCPR DAVLRLIRRI NPNIFIHGVV NGTYNAPFFL TRFREALFHF SALFDMFEAT 600 VPRDNPHRLM FEQGLFGRDA INVIACEGAE RVERPETYKQ WQVRNRRAGF KQLAIAPELL 660 NRVKGMVKKE YHKDFVVDED GKWVLQGWKG RILHALSPWV PA

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence Send to blast

MKFLCLEAIM ISADSRTENY TGFVYENGPM SVFSNSNNHQ NPGNVFKFED SSSNHAESPT  60
SDDPDGTNNG ESHAESTKNS NPILRYISEI LLDEEDDLQQ KPCMLHDCLK LQAAEKGFYD  120
AIGRSYPSSP SKIYGGFGDD CHDPDDSNFG RTTSSESNSS SYNTSENSCE SDWFNGWGDF  180
ESKFLQNSLI ESPEIKNSYE VLGLGNSQIR DSHGSVYFQN GTLHNIIPDM LPPITGGGSG  240
RSREKRSHHV DDGTQEGERG NKLSAVYADE SEPLEMFDAV LLCQDGKSPA IFCGDRESDS  300
GGSNVKASRS KKGANKGGAT NKGGTISTTV DLWSLLTQCA QAVASYDQRS ANEILKQIRQ  360
NSPASGDGLQ RLAKYFADGL ESRLAAGTPK YILLQSASAA DMLKAYKVYI TAIPFQRMSN  420
FLANRTILKL AQNESSLHII DFGIFYGFQW PCLIQRLSER PGGPPRLRIT GIDLPQPGFR  480
PAERVEETGR RLKNYCKRFG VPFEYNCLAQ KWETIQLEDL NIDRNEVTVV NCLYRLKNLS  540
DETVTANCPR DAVLRLIRRI NPNIFIHGVV NGTYNAPFFL TRFREALFHF SALFDMFEAT  600
VPRDNPHRLM FEQGLFGRDA INVIACEGAE RVERPETYKQ WQVRNRRAGF KQLAIAPELL  660
NRVKGMVKKE YHKDFVVDED GKWVLQGWKG RILHALSPWV PA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-49	338	701	25	380	Protein SCARECROW
5b3h_A	1e-49	338	701	24	379	Protein SCARECROW
5b3h_D	1e-49	338	701	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.10YFM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015952240.1	0.0	scarecrow-like protein 30 isoform X1
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A445E456	0.0	A0A445E456_ARAHY; Uncharacterized protein
STRING	GLYMA12G06630.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-170	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]