PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.10XQ1
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 500aa    MW: 54104 Da    PI: 4.588
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.10XQ1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22.1e-11186207526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C f+++tG Ck+G +CkF+H+
  Aradu.10XQ1 186 DCAFYMKTGNCKFGINCKFNHP 207
                  7********************8 PP
2zf-CCCH27.65.1e-09232255225
                  -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                  ++ +C++++r+G Ck+G  Ck++H
  Aradu.10XQ1 232 GQTECKYYLRSGGCKFGKDCKYNH 255
                  6789******************** PP
3zf-CCCH29.31.5e-09407433127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++f++tG Ck+ ++CkF+H++
  Aradu.10XQ1 407 PGEPECSYFLKTGDCKFKSNCKFHHPK 433
                  5799*********************96 PP
4zf-CCCH27.36.1e-09456478426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    C+++ r+G Ck+G+ Ck+ H+
  Aradu.10XQ1 456 NACMHYTRYGLCKFGPACKYDHP 478
                  57********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.84E-6180210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652181209IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5181208IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-9186207IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4187207IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-4230257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164230258IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-7232255IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5233257IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061406434IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4406433IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-7408433IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5411436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892452480IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-4453479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5454481IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-7455478IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEHTESDSAS SSLPNGGGDC ITATQQDPQL APSSNHGTDD PQPSDLYQTA QDGSLSAELQ  60
SKLDLKGLEG VGEEGGEIGD KVSNFGQVGG GVDDGGVTNG DDEVVNGGDE GFKGGGADGD  120
NWGWETNSWE EENVNVGLVD GDYDGLVNEY VDADGGDDVD GVENREEKSG GGRAQHQYPW  180
RPDAQDCAFY MKTGNCKFGI NCKFNHPINR RKNQAVKERP AEREEEQAER PGQTECKYYL  240
RSGGCKFGKD CKYNHTKGKD LTTEEVAELN FLGLPIRLFN HPDPTTVGGS ESSPGNGGSD  300
PSSRYSNGRS NTSSGYSNGG SISLRGVSQQ SVSTWSSPRT VNETSPFVPM MLSPPSPDWN  360
AYQAPTYLSE RSMHPPPPYV MNNPVIETNV YIHPQKRIQL DDFPERPGEP ECSYFLKTGD  420
CKFKSNCKFH HPKNRIATLP PCNLNDKGLP LRPDKNACMH YTRYGLCKFG PACKYDHPIN  480
PVPPTGVEVD GMGGNGGAVQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.10XQ1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-48AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997346.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 43-like
SwissprotQ9STM41e-102C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A445EQT60.0A0A445EQT6_ARAHY; Uncharacterized protein
STRINGGLYMA17G13580.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-93C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]