PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aradu.0HG1Q

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 446aa MW: 51252.8 Da PI: 8.0506

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.0HG1Q	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22.2	4.5e-07	38	81	49	91
FAR1 49 ekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 + +++t+++ ++C a++ ++ k g w ++k++l+H+H+++p Aradu.0HG1Q 38 SPTEKTNPTAGVNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 81 45789999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-5	38	81	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.186	225	261	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPETFGE GKWKYKISPT EKTNPTAGVN CPARIYIHTL 60 KDVGAWIISK VVLDHSHPCC PSEAEMLKQH RELSMSIRRT IENNDEVDRH IWVPIYLHHH 120 FWAGMRSTQR SESMHSFFNK YITRNSSEQA ERESDAADFH TVIPCATKSS IEAQFQDAYT 180 HAKFREVQAQ FRGKANCITR LKNSALGYSV YEVGEQVSSS MFNKFTVTYD SVAGEVKCQC 240 LLFESRGILC RHELSVLSFE QVSQVSPRYI LERWNKKVKR RHTHIKSSHD EPLMEPRSKR 300 FDQLVFRSQN ICEFAYESEE LTAILHRAYD NTMAEMEALK AKRKGTSSLS HEDANLESVN 360 ELQSPPRIRT RGRPKNRLGS KLEKQIANAT KKKKTKVLSE LMRECYIQIN LFDAASAAHS 420 NCSQYQGHVI NYQFRVPAVE DNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MDHSTSDCQL NPGEVDYEFE SNEVPETFGE GKWKYKISPT EKTNPTAGVN CPARIYIHTL  60
KDVGAWIISK VVLDHSHPCC PSEAEMLKQH RELSMSIRRT IENNDEVDRH IWVPIYLHHH  120
FWAGMRSTQR SESMHSFFNK YITRNSSEQA ERESDAADFH TVIPCATKSS IEAQFQDAYT  180
HAKFREVQAQ FRGKANCITR LKNSALGYSV YEVGEQVSSS MFNKFTVTYD SVAGEVKCQC  240
LLFESRGILC RHELSVLSFE QVSQVSPRYI LERWNKKVKR RHTHIKSSHD EPLMEPRSKR  300
FDQLVFRSQN ICEFAYESEE LTAILHRAYD NTMAEMEALK AKRKGTSSLS HEDANLESVN  360
ELQSPPRIRT RGRPKNRLGS KLEKQIANAT KKKKTKVLSE LMRECYIQIN LFDAASAAHS  420
NCSQYQGHVI NYQFRVPAVE DNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.0HG1Q

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445B3W8	0.0	A0A445B3W8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-25	far-red elongated hypocotyls 3