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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.06BAT | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GRAS | ||||||||
Protein Properties | Length: 636aa MW: 69675.4 Da PI: 5.771 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 370.5 | 2.3e-113 | 264 | 636 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 ++L+ecA +s+ + +a++ L++l++ +s++g+p+qR+ +yf+eAL ++l+ + a+ ++++ ++s+e + +k++++++P+ kf+hlta Aradu.06BAT 264 LKALTECAL-LSETEPDQASESLSQLRKSVSQNGNPIQRVSFYFAEALTRKLTFeREKDKNLAMVETASTATTSEELTLCYKALNDACPYSKFAHLTA 360 6899****8.67779999**********************************983334444455666666677999999******************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 NqaIlea+eg++r+Hi+Df+i qG+QW+aLlqa+a+R++g+p s+Ri g+ +++ g + +l++tg+rL++fA+ l+++fef++ + + +++l+ ++ Aradu.06BAT 361 NQAILEATEGSSRIHIVDFGIVQGIQWAALLQAFATRSSGKPeSIRISGIPAMALGtsPAASLSATGNRLSEFAKLLELNFEFRP-ILTPIHELNESS 457 **************************************77776*********99889999*************************.799********* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 + v+p+EalaVn++lql++llde+ + + + L+l ksl+Pk+v++ e ea+++++ F++rf +al+yys++f+sle +++++s er+ vEr+l+g Aradu.06BAT 458 FCVDPNEALAVNFMLQLYNLLDETPDAVE---AALRLAKSLRPKIVTLGEYEASLTRGGFMKRFKNALRYYSSVFESLEPNMAPDSPERMQVERHLFG 552 *********************99999998...9***************************************************************** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374 r+i+ vv g+ rer+e +e+Wr +e++GF++v+ls++a +qak ll +++ s y++ e++ +++ l Wkd pL++vS+Wr Aradu.06BAT 553 RRISGVVGLPGTV-RERMEDKEQWRVLMESCGFESVSLSHYAISQAKILLWNYSySSLYSLVESKPEFLsLAWKDVPLLTVSSWR 636 ************9.9***************************************9999******999999**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 59.217 | 237 | 614 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.8E-111 | 264 | 636 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 636 aa Download sequence Send to blast |
MAYMCADSGN LMAIAQQVIK QKQQQEQQQH NHHSHNHHHH QQQQQQQNQQ HLLGINPLSL 60 HPWNNTPPLG FPLTPTNDFP DPFQVGSGPD NPDPAFHFPP PLEPHSSSSF RFSDFAAATF 120 DSDEWMDTLM ATAAGDSTDT STIPAAAAAA AWHNGNSDFG LYGSSPFTTC PTRLSPTSDL 180 NRVIFSSEPH TAAVTTTAAA TGVSLQQAQL PATWATPPPL PPPTAVKEAP KMVASSPPAP 240 PQAPATVQGG FSSLPEPDSS HPLLKALTEC ALLSETEPDQ ASESLSQLRK SVSQNGNPIQ 300 RVSFYFAEAL TRKLTFEREK DKNLAMVETA STATTSEELT LCYKALNDAC PYSKFAHLTA 360 NQAILEATEG SSRIHIVDFG IVQGIQWAAL LQAFATRSSG KPESIRISGI PAMALGTSPA 420 ASLSATGNRL SEFAKLLELN FEFRPILTPI HELNESSFCV DPNEALAVNF MLQLYNLLDE 480 TPDAVEAALR LAKSLRPKIV TLGEYEASLT RGGFMKRFKN ALRYYSSVFE SLEPNMAPDS 540 PERMQVERHL FGRRISGVVG LPGTVRERME DKEQWRVLME SCGFESVSLS HYAISQAKIL 600 LWNYSYSSLY SLVESKPEFL SLAWKDVPLL TVSSWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-147 | 260 | 636 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.06BAT |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015952823.1 | 0.0 | scarecrow-like protein 4 | ||||
Refseq | XP_025686925.1 | 0.0 | SCARECROW-LIKE protein 7-like | ||||
Swissprot | A0A024B7I0 | 0.0 | SCL7_POPEU; SCARECROW-LIKE protein 7 | ||||
TrEMBL | A0A445E2E4 | 0.0 | A0A445E2E4_ARAHY; Uncharacterized protein | ||||
STRING | cassava4.1_003937m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6280 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 1e-162 | GRAS family protein |