PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aradu.039HC

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 522aa MW: 58406.9 Da PI: 6.6345

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.039HC	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.2	6.8e-39	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC+++C++apyfp ++p++fa vh++FGasn+ k+l++l++ +reda++sl++eAear++ PvyG+v++i lqq+l+q + +l ++k Aradu.039HC 7 PCAACKFLRRKCTQECIFAPYFPPDNPQRFASVHRVFGASNIGKILNDLSPCQREDAVTSLAFEAEARLDSPVYGCVRHIVILQQRLHQIQMDLLHAK 104 7*******************************************************************************************998888 PP DUF260 99 ee 100 +e Aradu.039HC 105 SE 106 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.492	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-38	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MSSTNSPCAA CKFLRRKCTQ ECIFAPYFPP DNPQRFASVH RVFGASNIGK ILNDLSPCQR 60 EDAVTSLAFE AEARLDSPVY GCVRHIVILQ QRLHQIQMDL LHAKSELSAY INPQGIQGPF 120 SPHGIRGLPL YPQGKPPSSS AALFGPPYGP NVIQSLMPPS SVQHNGTMNA NADLDPEQRE 180 LLGAAQQHDM MVRNYEQQQQ QQQQEYLRYN AATGVIEPVA AASPVSVVTA DGDGRGNGVF 240 AQMAAHSGGQ GGELTPCLGL GTFDSGGTYH HQLQQEPPQH GGVGENYVGL ANRHHYPVEA 300 QFLLPSQQQQ SESEDFVAFA YNNKQAREQE VVEEAGGYWK VATDVEMYYN NHFLMQHDLL 360 RELANHQSNQ ESIERRKRLV IDLTQNGKNC PNWLVGQNQP GIVSRMLSFL SVRGTQQQQK 420 QEQVTARIMF VSTDETFTPD WYNMNHDETE VLILNIHSNK YTFPDFIQKM RKLKVLIVTN 480 QGFHPCELNN FEVLGSLPCL KTIRLEKVSI PSLCKFNKLS LF

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MSSTNSPCAA CKFLRRKCTQ ECIFAPYFPP DNPQRFASVH RVFGASNIGK ILNDLSPCQR  60
EDAVTSLAFE AEARLDSPVY GCVRHIVILQ QRLHQIQMDL LHAKSELSAY INPQGIQGPF  120
SPHGIRGLPL YPQGKPPSSS AALFGPPYGP NVIQSLMPPS SVQHNGTMNA NADLDPEQRE  180
LLGAAQQHDM MVRNYEQQQQ QQQQEYLRYN AATGVIEPVA AASPVSVVTA DGDGRGNGVF  240
AQMAAHSGGQ GGELTPCLGL GTFDSGGTYH HQLQQEPPQH GGVGENYVGL ANRHHYPVEA  300
QFLLPSQQQQ SESEDFVAFA YNNKQAREQE VVEEAGGYWK VATDVEMYYN NHFLMQHDLL  360
RELANHQSNQ ESIERRKRLV IDLTQNGKNC PNWLVGQNQP GIVSRMLSFL SVRGTQQQQK  420
QEQVTARIMF VSTDETFTPD WYNMNHDETE VLILNIHSNK YTFPDFIQKM RKLKVLIVTN  480
QGFHPCELNN FEVLGSLPCL KTIRLEKVSI PSLCKFNKLS LF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-42	6	110	10	114	LOB family transfactor Ramosa2.1
5ly0_B	6e-42	6	110	10	114	LOB family transfactor Ramosa2.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.039HC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020981134.1	0.0	protein LATERAL ORGAN BOUNDARIES-like
TrEMBL	A0A445EXF9	0.0	A0A445EXF9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF23337	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	8e-55	ASYMMETRIC LEAVES 2-like 1