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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.01TNR | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 595aa MW: 66639 Da PI: 9.3293 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.3 | 7.2e-08 | 503 | 552 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + ++ k+Rt ++k++w ++ Aradu.01TNR 503 RRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFdhaKHRTYVDLKDKWKTL 552 567888999**********************99**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54236 | 4.08E-6 | 309 | 388 | IPR029071 | Ubiquitin-related domain |
PROSITE profile | PS51294 | 14.75 | 498 | 557 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-7 | 502 | 555 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-10 | 503 | 553 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.11E-15 | 504 | 585 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 7.08E-17 | 504 | 554 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 595 aa Download sequence Send to blast |
MVLQKRLNYS FDGYHVPVIP RASRSVRGRG SIRKKRDSSH IHAFEILASV AGNFLHANES 60 SNPENTSFPK EADIFHGNDV KEKENDETVG LFKGDLFTHG TCSKTTTTCV PSLQGEHDNQ 120 SHLEGQGQNV LEREDGGMKR RNSNEKIIHI KGSYVGVTEP GHRVFKDCTL ENNVEKPLPE 180 CHNHLDPSHG GSTARKLVNT DNDENFARCT QSNLRNKISS SPLDTPKLKD ASPIASDENN 240 SRDNSELENL QRMYPFKKRK FFNQTSSSTS DRGSQCQGVF DFSDSKVNST IHGIEESSSI 300 AGQQLHPGSK GCNVKLSIKS FKVPELFIDI PETATIGSLK RTVMEAVTTI LGDELHVGIL 360 LQGKKIRDDN KTLIQTGICQ DDKRHRLGFM LEPRHTRISS PSYNEDPCYL TSSPQQKLSR 420 QSTSLMFQQG TYNVSQERSL IKIESCAEGD LKLASSVADT SANNNMSKCR ALVAVPAINM 480 QALAVVPLRR KSGNPDFGQR RIRRPFSVLE VEALVQAVEK LGTGRWRDVK QRAFDHAKHR 540 TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLAAH AYWSQQQCKH QLKPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 9e-55 | 487 | 595 | 1 | 109 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 250 | 259 | QRMYPFKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.01TNR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006362 | 6e-92 | AP006362.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT34B12, TM0147a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025692694.1 | 0.0 | telomere repeat-binding protein 5-like | ||||
TrEMBL | A0A445DGJ0 | 0.0 | A0A445DGJ0_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA07G15940.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13188 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 2e-94 | TRF-like 2 |