PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.001N3
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 644aa    MW: 71239.7 Da    PI: 7.3719
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.001N3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.4e-18309408198
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++l +
  Aradu.001N3 309 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGKLIM 404
                  89**************************555567778***************9989999999***9.********************876.7777777 PP

                  EEE- CS
           B3  95 kvfr 98 
                  ++++
  Aradu.001N3 405 GFRK 408
                  7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-29301417IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-19306408IPR015300DNA-binding pseudobarrel domain
CDDcd100177.52E-22307408No hitNo description
SMARTSM010192.7E-19309409IPR003340B3 DNA binding domain
PfamPF023621.6E-15309408IPR003340B3 DNA binding domain
PROSITE profilePS5086311.096309410IPR003340B3 DNA binding domain
PROSITE profilePS5105013.497574624IPR011124Zinc finger, CW-type
PfamPF074969.8E-11579621IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MESRSCMNVV CATLTSIQWR KGWALRSGEF ADLCDKCGSA YEQSIFCEKF HSNDSGWREC  60
VSCGKRLHCG CIASKSQLEL LDSGGVAGTE KPTGSGASKI KNVSEQLCPS LANQLNVRGM  120
QVGHSTDSDG LRWWLKPHNP DANVPFPEIK TEEGLPSTAE LGSQLISQFH CKSNGSSRVA  180
KSDNCQADME MQDIYESLAH ANLSMTLASP SGNSNPFHSA IADEREQSKT SPPLLLGSRS  240
RHLLPKPPRS SLGSSLETNA AMVSQIRVAR PPAEGRGRNQ LLPRYWPRIT DQELQQISGD  300
SNSTIVPLFE KMLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGLPLRIQD VKGKEWVFQF  360
RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRMDPEG KLIMGFRKAT NSAAVQESHP  420
SNMPNGSYSS ETSYSGVYEN LPILSGYSGL LQSQKGSSES PLNTLSKKWN SAGGDMNWHN  480
IEIPEKRTRE GSLLPAVLVP EKKKTRNIGS KSKRLLIDSQ DALELKLTWE EAQDLLRPPP  540
TAKPSIVMIE DHVFEEYEEP PVFGKKSIFV ARSAGINEQW TQCDNCSKWR KLPVDVLVPP  600
KWTCADNLWD QSRRACSAPD ELSPREMDNL LRLIKGISPP LEFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-702874162131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.001N3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015950568.10.0B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_015950570.10.0B3 domain-containing transcription repressor VAL2 isoform X1
RefseqXP_015950572.10.0B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A445E9X10.0A0A445E9X1_ARAHY; Uncharacterized protein
STRINGGLYMA03G04330.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]