PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G425000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 527aa    MW: 57962.7 Da    PI: 8.9344
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G425000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002689109323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C+ C+k F r  nL+ H r H
  Aqcoe7G425000.1.p  89 CEVCNKGFQRDQNLQLHRRGH 109
                        *******************88 PP
2zf-C2H2120.00062163185123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s+ k H +t+
  Aqcoe7G425000.1.p 163 WKCDKCSKKYAVQSDWKAHSKTC 185
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.03E-786109No hitNo description
Gene3DG3DSA:3.30.160.601.6E-586109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1387109IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.84587109IPR007087Zinc finger, C2H2
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM00355100128158IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4151184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.03E-7158183No hitNo description
SMARTSM00355150163183IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MMKNLIIQQS PVLDENLSNL TCTSDEPIAS SGSRPDVGTM YPQQSFASPH QTQTSAVKRK  60
RNLPGNPDPD AEVIALSPKT LMATNRFLCE VCNKGFQRDQ NLQLHRRGHN LPWKLKQRTS  120
KEIKKRVYVC PEVTCVHHDP SRALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVQSDWKA  180
HSKTCGTREY KCDCGTLFSR RDSFITHRAF CDALAEESAK AITTNPLMSS QSGSSTQHLN  240
LQHQFSTIHD FHQSNSIKLE QHQHQYERQD QVPQWLSSQP SLGDLSSSIF CNRLEQEFSQ  300
SQQASSTPHH QNTNLNPTPS FPPYNPSSSP HMSATALLQK AAQMGATMST PSSSSGMLIR  360
PVQQTHMSAN TGNPTTPTSG FGLGLSSHEV LENGFMHSLT AFGNKTSVGQ LSAPSLLQEM  420
SSLNNSENVF DGSSFEEAFG GMLNSKSAKN PTEHLSKKQK TIEGGGASST AGVGGRGGGN  480
DGLTRDFLGL RAFPHRNFLN IAELDQCMAS SNPYEQQNQN KKPWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35159220364Zinc finger protein JACKDAW
5b3h_F3e-35159220364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262085.10.0PREDICTED: protein indeterminate-domain 7 isoform X1
SwissprotQ8H1F51e-118IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2G5DID20.0A0A2G5DID2_AQUCA; Uncharacterized protein
STRINGAquca_020_00441.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-106indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]