PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G393500.4.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family CPP
Protein Properties Length: 1052aa    MW: 116074 Da    PI: 7.9638
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G393500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.76.3e-15633671341
                TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        +k+CnC++skClk+YCeCfaag +C+e C C++C+Nk +
  Aqcoe7G393500.4.p 633 CKRCNCRRSKCLKLYCECFAAGIYCAEPCACQECFNKPQ 671
                        89**********************************976 PP
2TCR50.93e-16719757139
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        ++k+gCnCkks ClkkYCeC+++g+ Cs  C+Ce+CkN 
  Aqcoe7G393500.4.p 719 RHKRGCNCKKSMCLKKYCECYQSGVGCSAGCRCEGCKNA 757
                        589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-15631672IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.696632759IPR005172CRC domain
PfamPF036383.4E-11634669IPR005172CRC domain
SMARTSM011141.1E-16719760IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-11721757IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 1052 aa     Download sequence    Send to blast
MDSPETNKIV TSTSTSSSTT SSPVVQLCFH VQFDGLFRLI CVDSSAFYVR NVNSVLFDLD  60
RWIGSLLFVG NVVVGVKLYL VTSQHSYLVM LKFKSFGDTD QNSYRHFALT SLMESPFFNY  120
LRTLSPIKPV KAAHVAQGFP ELSIPTPPPV FTSPRLNPQS ETIFLNRSKH FHSSNKKLSI  180
GHEGNRDRGT DISERPISRL TVRLVSCSQK GRDSKCSAQV QPSSPSQFVD EFLADPVEVV  240
RTNSSDPDVT CLNHVDDTPE VQLGCIRSKE TTVKENNVND ELLKYVENGS DVQIKSSEQT  300
EVDLQGRSVA VFKTGKMENG ESQSVVYQDL ASEDVNDINF PNSCIKPVSG AQNSPHGKAR  360
SAEGSQEATC DNNNQVLSEI MQMGEYAGVA SNESAETKIV DPEETGQNQR VLRRRCLQFE  420
ASVAHRKSIF SNQGFSSPAI ISRCSRLPAN STEMEMLESS ELDCGISNNI CTANSSQPMA  480
SKPSPCAAKT VETHNDKLNR SVRNGGNPSI KAPLPSGIGL HLNSIVNTAA MGCTASLSRK  540
PSENDYPSAQ REKPPSVPNQ YLPTESKSFS VPASVLGKFS VKRLGYELET QSIADNSATF  600
QFPNDNADQI QEFNQLSPQK KRKRTFTNED EGCKRCNCRR SKCLKLYCEC FAAGIYCAEP  660
CACQECFNKP QYEDKVLETR KQIESRNPLA FAPKIVRRVT DSPANSIEEN KKVTPASARH  720
KRGCNCKKSM CLKKYCECYQ SGVGCSAGCR CEGCKNAFGI KEGYGEVSER LSRKVDGESW  780
EDNSDGKLAM VTRSNFIEQE HCHPHNNLTP LTPSLQYPNQ GKDVHTSRLP GRRFLPSPES  840
ETNHLSLYAK SPGSTRYVFT HERRSKMGDG NLDIVFDQEV EFSTTGRIDQ FSPRWDGFED  900
ICDLTPLPQT SSKAKAILSP SNSRDSGKVS QIQLQGSVRL SGSLRWRSSP ITPTPQLGES  960
KLRQEPDSDV GCAILEDDTP DILKDTHTPI KTVKASSPNQ KRVSPPHNHL HNLRSSPSPG  1020
LKSGRKFVLQ SISSFPPLTP YSDPKDCSSK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1663475612120Protein lin-54 homolog
5fd3_B2e-1663475612120Protein lin-54 homolog
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1619624KKRKRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254334.10.0PREDICTED: protein tesmin/TSO1-like CXC 4
TrEMBLA0A2G5DG740.0A0A2G5DG74_AQUCA; Uncharacterized protein
STRINGAquca_020_00165.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-67TESMIN/TSO1-like CXC 2