PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Aqcoe7G351200.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

M-type_MADS

Protein Properties

Length: 275aa MW: 30731.3 Da PI: 7.1906

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G351200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	42.8	6.7e-14	10	50	2	42
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ien+s r +f +R++ ++KK +ELS+LC+++++ ii ++ Aqcoe7G351200.1.p 10 WIENNSTRRASFRNRKASLIKKLSELSILCGVDACAIINGP 50 59***********************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-16	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.582	1	47	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.09E-22	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.98E-28	2	85	No hit	No description
PRINTS	PR00404	1.0E-5	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.6E-13	11	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-5	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MGRGKAKLEW IENNSTRRAS FRNRKASLIK KLSELSILCG VDACAIINGP CDPKPEVWPS 60 PKEAQRVMNR FKTMPEMEKS QKMMNQESYL EQRIAKVKEK LKKQQFANRE MEITDLMHQT 120 LTGKGLEDVR IEELADLAWV IDQKMKKIQG RIVDLRRTMS TPQPIAGVAI EAEMDAAQRQ 180 SLFMEGMNPP AGQQPPPPPP PSPLNYGYYG GDAIEAEMDT VQRQSLFMEG MNPPAEQQPP 240 PPPPSLLNYG YYGGDGSVMP PYGDNFPGSN GFYP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009392051.1	8e-62	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	A0A2G5DQZ4	0.0	A0A2G5DQZ4_AQUCA; Uncharacterized protein
STRING	Aquca_016_00296.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	4e-39	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Aqcoe7G351200.1.p