PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G305000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 595aa    MW: 67303.1 Da    PI: 4.7209
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G305000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.82.8e-912165922374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..........sseelaalkl 83 
                         +lLl+ Ae + +++  +a++lL++   l+s++g+p+qR+ +yf+eAL++rl+r++ +++ +   +  ++++          + +  +a+ l
  Aqcoe7G305000.1.p 216 ASLLLASAEKIGNQQYDRASKLLTQCAYLSSSTGNPVQRVSFYFAEALQERLNRETGRISFKGGKKGRQRMEfgvaidfeegQMTPSSAH-L 306
                        689***************************************************888888777666666666566555443322223333.2 PP

               GRAS  84 .fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelg 173
                          ++  P+ ++ ++   qaI+e+v+ +++vH +D++i+ G+ W  L+qaLa+R e p   +++Tg+g     +++e++ tg+rLa+fAe++g
  Aqcoe7G305000.1.p 307 eCHQKIPFCQVLQFPGVQAIVESVALARKVHLVDLGIQAGIAWTVLMQALAARHECPVeLFKLTGIGT----DEQEIQDTGKRLANFAESMG 394
                        59999*************************************************7766489*******....9******************* PP

               GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                        +pf+f+++++++++dl+ e ++v ++Ea+aV + + l ++l +s  l+    ++++++++l+P ++vv+e e  hns+sF++rf+e+l +ys
  Aqcoe7G305000.1.p 395 LPFSFKAIIVSNMDDLKEELFDVTEDEAIAVYSPFVLRTMLTRSERLD----SLMRVIRNLNPCLMVVTEIEGCHNSPSFFNRFIECLFFYS 482
                        ****************************************95555555....5*************************************** PP

               GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesg 356
                        a+fd+lea + r++++ri+ Er+++g+ i+n+va+eg+er+ rh   + Wr+ + ++G+ ++++s++   qa+l+ ++++ +   +++ +++
  Aqcoe7G305000.1.p 483 AFFDCLEACMDRNNQNRITTERHYFGQGIMNIVATEGEERTFRHVGINVWRAFFARFGMVEIEFSHSSLYQANLIRKQFAcGSLCTLDMNKK 574
                        ********************************************************************************9999******** PP

               GRAS 357 slvlgWkdrpLvsvSaWr 374
                        +l+ gWk+ pL s+S+W+
  Aqcoe7G305000.1.p 575 CLTVGWKGTPLHSLSVWK 592
                        *****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.213189571IPR005202Transcription factor GRAS
PfamPF035149.7E-89216592IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MASAFFSFEP YDCGRVHDVQ APLKNCETNG GLTKGEETQL FGSEDWGDLD YICSQYASYE  60
DSIPRKEVIL SDEEDQQQPF SDFGMLDDFQ FIIDSPPFQA PDESVTLDSV LTELSDFVEP  120
KNERQYPTTL GSLELLNEYK SGYNKMNVGR INENHHEPCK VVDDQRLSTE EVMRVAGAQY  180
IQFSVRNDDH LSMLSHPFSC AFSGLGREET NDVELASLLL ASAEKIGNQQ YDRASKLLTQ  240
CAYLSSSTGN PVQRVSFYFA EALQERLNRE TGRISFKGGK KGRQRMEFGV AIDFEEGQMT  300
PSSAHLECHQ KIPFCQVLQF PGVQAIVESV ALARKVHLVD LGIQAGIAWT VLMQALAARH  360
ECPVELFKLT GIGTDEQEIQ DTGKRLANFA ESMGLPFSFK AIIVSNMDDL KEELFDVTED  420
EAIAVYSPFV LRTMLTRSER LDSLMRVIRN LNPCLMVVTE IEGCHNSPSF FNRFIECLFF  480
YSAFFDCLEA CMDRNNQNRI TTERHYFGQG IMNIVATEGE ERTFRHVGIN VWRAFFARFG  540
MVEIEFSHSS LYQANLIRKQ FACGSLCTLD MNKKCLTVGW KGTPLHSLSV WKFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3824559233375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007035778.20.0PREDICTED: DELLA protein RGL1
TrEMBLA0A2G5DJE80.0A0A2G5DJE8_AQUCA; Uncharacterized protein
STRINGAquca_018_00004.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-63RGA-like 2