PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G294700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 331aa    MW: 37664.2 Da    PI: 6.9125
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G294700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.41.8e-132263344
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                       i+ +s r+ tf +R++g+ KK +E  +LC++++++ii+++++
  Aqcoe7G294700.1.p 22 ISKESARNATFVRRKKGLEKKIYEFATLCGVDACMIIYGPNN 63
                       88999***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.6521264IPR002100Transcription factor, MADS-box
SMARTSM004327.3E-141271IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-1813110IPR002100Transcription factor, MADS-box
CDDcd002669.03E-1913103No hitNo description
PRINTSPR004042.5E-71434IPR002100Transcription factor, MADS-box
PfamPF003196.8E-162264IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-73449IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-74970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MLISCYGLFM QMGRAKLDLR LISKESARNA TFVRRKKGLE KKIYEFATLC GVDACMIIYG  60
PNNRNNACMS KPETWPRNED EVYRIIDNYK KYEKEKRSLG LADSFSVQKK KLGDELAKLR  120
KKNDEISQQS WEDRIYDLSK DQMEQLLPMI DSKIEMINAK MISIEMMNQN MIQEAGTGMF  180
GNTQAPPQNH PFLIPINFNG NAWNNNLLPM QTQPISYAVP PGHHMMQMEY PSNLPMFLDQ  240
GQMMNSMMMI NGNNGDCSNM VPAGDLSFIA FQHPYYQDQG LRPSDEYGSM DQAPSTFYLP  300
ANTQSMSSPY VPNLMPGSSG QLPSYRPPNF *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802430.0JX680243.1 Aquilegia coerulea MADS-box protein AGL86 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK7X6Q50.0K7X6Q5_AQUCA; MADS-box protein AGL86 (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.17e-23AGAMOUS-like 82