PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Aqcoe7G170900.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

HD-ZIP

Protein Properties

Length: 754aa MW: 83657.6 Da PI: 6.1487

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G170900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.2	2.1e-21	98	153	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+kklgL rqVk+WFqNrR++ k Aqcoe7G170900.1.p 98 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKKLGLAPRQVKFWFQNRRTQIK 153 7999************************************************9877 PP
2	START	222.5	1.4e-69	270	492	3	206
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 +a++el k+a+a+ep+W +s+ e++n+de++++f+++k+ +s+ea+r++gvv+ +l++lv++++d++ qW+e+++ ka+ Aqcoe7G170900.1.p 270 VDQAMEELTKMASAGEPLWIRSVetgrEILNYDEYIREFSSEKSgksqikRSIEASRETGVVFVDLPRLVQSFMDVN-QWKEMFPciisKAA 360 5789*********************************99999*****************************.********** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165 +++vissg ga+qlm+aelq+l+p+vp R+++f+R+++ql+ ++w+ivd+Svd +++ +s + ++++ pSg+++e+ksngh+kv+ Aqcoe7G170900.1.p 361 IVDVISSGdtinrnGAIQLMFAELQMLTPMVPtREVYFIRSCKQLTPDRWAIVDISVDKVEDNI-DSALTKCRKQPSGCILEDKSNGHCKVI 451 **********************************************************98.9********************** PP EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 wveh +++++ +h ++rs+v++gla+gak+w++tlq+qce+ Aqcoe7G170900.1.p 452 WVEHLECQKSPVHTMYRSIVNNGLAFGAKHWMSTLQHQCER 492 *************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-22	85	149	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.04E-20	86	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.155	95	155	IPR001356	Homeobox domain
SMART	SM00389	1.1E-18	97	159	IPR001356	Homeobox domain
Pfam	PF00046	1.0E-18	98	153	IPR001356	Homeobox domain
CDD	cd00086	1.15E-16	105	153	No hit	No description
PROSITE pattern	PS00027	0	130	153	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	40.482	259	495	IPR002913	START domain
SuperFamily	SSF55961	1.65E-33	262	492	No hit	No description
CDD	cd08875	3.80E-108	263	491	No hit	No description
SMART	SM00234	1.6E-69	268	492	IPR002913	START domain
Pfam	PF01852	1.3E-55	270	492	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	1.3E-4	313	491	IPR023393	START-like domain
SuperFamily	SSF55961	1.3E-13	522	736	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009957	Biological Process	epidermal cell fate specification
GO:0010062	Biological Process	negative regulation of trichoblast fate specification
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MSSNNPNSRT KDFFASPALS LSLAGVFRNA GAMASSSMEV EQGEEEINGG NGGGGGREGT 60 VDVSSENTGN GRSDEDMDDE GVQEDDGDHE DIHKKKKRKK YHRHTAEQIR EMEALFKESP 120 HPDEKQRQQL SKKLGLAPRQ VKFWFQNRRT QIKAVQERHE NSLLKSELEK IREENRAMRE 180 TVKKACCPNC GSATSNNDTT LTTEEQQLRI ENAKLKTEIE KLRAVSGKYP TKTMSPSSSC 240 SAGNDQESRS SLENYNELIG LERSRISEIV DQAMEELTKM ASAGEPLWIR SVETGREILN 300 YDEYIREFSS EKSGKSQIKR SIEASRETGV VFVDLPRLVQ SFMDVNQWKE MFPCIISKAA 360 IVDVISSGDT INRNGAIQLM FAELQMLTPM VPTREVYFIR SCKQLTPDRW AIVDISVDKV 420 EDNIDSALTK CRKQPSGCIL EDKSNGHCKV IWVEHLECQK SPVHTMYRSI VNNGLAFGAK 480 HWMSTLQHQC ERLVFFMATN VPTKDSSGVS TLAGRKSILK LAQRMTWSFC RAVGASSYNT 540 WTKLLTKGGD DLRVASRKNL NDPGEPLGMI LCAVSSVWLP VSPHTLFDFL RDETQRNEWD 600 IMSTGIPVES IANLAKGQDR GNAVAVQAMK SKENSMWILQ DSCTNSYESM VVYAPVEIAG 660 LQSVMTGCDS SNIAILPSGF SILPDGFETR PTVITTRPEE KSMDGGSLLT IAFQILANTS 720 PTAKLSAESV DTVNTLISCT LQKIKASLKC EDG*

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MSSNNPNSRT KDFFASPALS LSLAGVFRNA GAMASSSMEV EQGEEEINGG NGGGGGREGT  60
VDVSSENTGN GRSDEDMDDE GVQEDDGDHE DIHKKKKRKK YHRHTAEQIR EMEALFKESP  120
HPDEKQRQQL SKKLGLAPRQ VKFWFQNRRT QIKAVQERHE NSLLKSELEK IREENRAMRE  180
TVKKACCPNC GSATSNNDTT LTTEEQQLRI ENAKLKTEIE KLRAVSGKYP TKTMSPSSSC  240
SAGNDQESRS SLENYNELIG LERSRISEIV DQAMEELTKM ASAGEPLWIR SVETGREILN  300
YDEYIREFSS EKSGKSQIKR SIEASRETGV VFVDLPRLVQ SFMDVNQWKE MFPCIISKAA  360
IVDVISSGDT INRNGAIQLM FAELQMLTPM VPTREVYFIR SCKQLTPDRW AIVDISVDKV  420
EDNIDSALTK CRKQPSGCIL EDKSNGHCKV IWVEHLECQK SPVHTMYRSI VNNGLAFGAK  480
HWMSTLQHQC ERLVFFMATN VPTKDSSGVS TLAGRKSILK LAQRMTWSFC RAVGASSYNT  540
WTKLLTKGGD DLRVASRKNL NDPGEPLGMI LCAVSSVWLP VSPHTLFDFL RDETQRNEWD  600
IMSTGIPVES IANLAKGQDR GNAVAVQAMK SKENSMWILQ DSCTNSYESM VVYAPVEIAG  660
LQSVMTGCDS SNIAILPSGF SILPDGFETR PTVITTRPEE KSMDGGSLLT IAFQILANTS  720
PTAKLSAESV DTVNTLISCT LQKIKASLKC EDG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	98	KKKKRK
2	93	99	KKKKRKK
3	95	99	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010249693.1	0.0	PREDICTED: homeobox-leucine zipper protein GLABRA 2-like
Swissprot	P46607	0.0	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A2G5FAF2	0.0	A0A2G5FAF2_AQUCA; Uncharacterized protein
STRING	Aquca_001_00425.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Aqcoe7G170900.1.p

Publications ? help Back to Top
Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]