PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Regulation |

Basic Information? help Back to Top

TF ID

Aqcoe7G045700.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

GRAS

Protein Properties

Length: 673aa MW: 75369.8 Da PI: 5.8585

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G045700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	413.1	2.6e-126	292	658	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 lv++Ll+c++ +ss++ ++++++L+rl ela pdg+p++R++ay+te+La r ar ++++++ p+e +++++ ++l+l+++vsPi+k Aqcoe7G045700.1.p 292 LVSVLLACVDSISSKNIAAISHFLSRLGELACPDGTPIHRVTAYYTEGLALRAARLWPHTFHLSIPREIG-RTEEDIGTSLRLLNHVSPIPK 382 6789*******************************************************988888876.6788999999******* PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 f h+t N+++l+a+eg++rvHiiDfdi+qGlQWp L+q+LasR+++p ++RiTg+g+ sk+ l+etg+rLa fA +l++pfef++ v++ Aqcoe7G045700.1.p 383 FLHFTSNEMMLRAFEGKDRVHIIDFDIKQGLQWPGLFQSLASRSSPPTHVRITGIGD----SKQDLQETGDRLAGFAGALNLPFEFHA-VVD 469 *****************************************************....9**********************.7 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276 rled++l++L+vk++E++aVn++lqlh++l + +++L l++s++P+vv ++eqea+hn++++ r++++leyy alfds++++lp Aqcoe7G045700.1.p 470 RLEDVRLWMLHVKEKESVAVNCILQLHKILYDGSGAVL--RDFLGLIRSTNPTVVLMAEQEAKHNDPRLELRVSNSLEYYCALFDSIDNSLP 559 ***************************976655555..89********************************************** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdr 365 +s+ r+k+E++ ++rei+n+va eg++r+erhe++++Wr+ +e++GF+ + ++++++ q ++ll++++++ yr+e e+ + l+l W+d+ Aqcoe7G045700.1.p 560 LNSSIRMKIEEM-FAREIRNMVAFEGSDRFERHENFKEWRKLIEHCGFRCMGVGDREMLQSRMLLKMYSGEKYRLEkqgEDGAGLTLLWQDQ 650 ********.****************************************************9996656678888** PP GRAS 366 pLvsvSaW 373 pL++vSaW Aqcoe7G045700.1.p 651 PLYTVSAW 658 ****** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.648	266	636	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.8E-124	292	658	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MLAGGSTLLS PRHRVRSEAS NQLKACHYQL PSMSTQRLDF SCNFPRRDAP RSQLIRPVGL 60 SVEVPNEARG SCSMRPKIRL SPSLASAQNA LWEGRREFEE GLWERERNNL KRIAEQDSSD 120 EACTNRATKR RRSDSGTTTP ADSSDGERMS VNQLESGSFW FPQTAEVPGS MPGFTVYEPP 180 SVEPSNEERF CFPPDNVILP PMLVSSRPWV ESVVTDITDK GENDVESSED TKKAVSGSST 240 SSESGGWTQR LEGTSEDDDT GNHQSQIPYS SEGTRFLTGN EGVQKEHQGF ELVSVLLACV 300 DSISSKNIAA ISHFLSRLGE LACPDGTPIH RVTAYYTEGL ALRAARLWPH TFHLSIPREI 360 GRTEEDIGTS LRLLNHVSPI PKFLHFTSNE MMLRAFEGKD RVHIIDFDIK QGLQWPGLFQ 420 SLASRSSPPT HVRITGIGDS KQDLQETGDR LAGFAGALNL PFEFHAVVDR LEDVRLWMLH 480 VKEKESVAVN CILQLHKILY DGSGAVLRDF LGLIRSTNPT VVLMAEQEAK HNDPRLELRV 540 SNSLEYYCAL FDSIDNSLPL NSSIRMKIEE MFAREIRNMV AFEGSDRFER HENFKEWRKL 600 IEHCGFRCMG VGDREMLQSR MLLKMYSGEK YRLEKQGEDG AGLTLLWQDQ PLYTVSAWSP 660 IDVAGSSSSV RP*

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MLAGGSTLLS PRHRVRSEAS NQLKACHYQL PSMSTQRLDF SCNFPRRDAP RSQLIRPVGL  60
SVEVPNEARG SCSMRPKIRL SPSLASAQNA LWEGRREFEE GLWERERNNL KRIAEQDSSD  120
EACTNRATKR RRSDSGTTTP ADSSDGERMS VNQLESGSFW FPQTAEVPGS MPGFTVYEPP  180
SVEPSNEERF CFPPDNVILP PMLVSSRPWV ESVVTDITDK GENDVESSED TKKAVSGSST  240
SSESGGWTQR LEGTSEDDDT GNHQSQIPYS SEGTRFLTGN EGVQKEHQGF ELVSVLLACV  300
DSISSKNIAA ISHFLSRLGE LACPDGTPIH RVTAYYTEGL ALRAARLWPH TFHLSIPREI  360
GRTEEDIGTS LRLLNHVSPI PKFLHFTSNE MMLRAFEGKD RVHIIDFDIK QGLQWPGLFQ  420
SLASRSSPPT HVRITGIGDS KQDLQETGDR LAGFAGALNL PFEFHAVVDR LEDVRLWMLH  480
VKEKESVAVN CILQLHKILY DGSGAVLRDF LGLIRSTNPT VVLMAEQEAK HNDPRLELRV  540
SNSLEYYCAL FDSIDNSLPL NSSIRMKIEE MFAREIRNMV AFEGSDRFER HENFKEWRKL  600
IEHCGFRCMG VGDREMLQSR MLLKMYSGEK YRLEKQGEDG AGLTLLWQDQ PLYTVSAWSP  660
IDVAGSSSSV RP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-68	299	660	26	380	Protein SCARECROW
5b3h_A	9e-68	299	660	25	379	Protein SCARECROW
5b3h_D	9e-68	299	660	25	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278558.1	0.0	PREDICTED: scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A2G5E228	0.0	A0A2G5E228_AQUCA; Uncharacterized protein
STRING	Aquca_013_00407.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	Aqcoe7G045700.1.p