PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G026900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 647aa    MW: 71945.1 Da    PI: 7.046
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G026900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.83.2e-1092736453373
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        ++ +++A+a+s+g+l  a++ L +ls+ ++ +gd+ qR +ay++ AL++rl+     +    ++s++++  + +++ a+++++e sP++k+s
  Aqcoe7G026900.1.p 273 QTFIDIATAISDGNLDIATTKLDHLSQVSNFHGDSEQRFIAYMVSALRSRLNP----TE---NSSNATQLFQNDHILATQMLYESSPCFKLS 357
                        67899***********************************************9....33...233333333789****************** PP

               GRAS  95 hltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvl 181
                        +++aN aIlea++ + + +H++Dfdi+qG Q+++L+q++a+R+ +p  +RiT v   +++    ++++ + +g+rL+kfA+++g+ ++fn++
  Aqcoe7G026900.1.p 358 FMAANLAILEATKDQpNNIHVLDFDIGQGNQYISLIQSIAERRTKPIIIRITSVLLLHPEenqnQNQNQRIVGDRLRKFADHFGIGLKFNIV 449
                        **************99*************************************964433334579999999********************* PP

               GRAS 182 vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                        v+k++++l+ e+L + +    Eal+Vn++++l++l desvs+e++rde+L+lvksl+P+vv++veqe+++n+++F++r++e  +yy alf+s
  Aqcoe7G026900.1.p 450 VCKTISSLNQESLLCCEndeAEALVVNFAFKLYKLSDESVSTENPRDELLRLVKSLKPRVVTMVEQEMNCNTATFVARVAEVSSYYLALFNS 541
                        ************966555669*********************************************************************** PP

               GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvl 360
                        +++++ r+ +er+k+E+  lgr++ n v+ceg+er+er+e ++kWr+r+++aGF + pl++++a ++k+ l+ v+  + g++v+ee + +++
  Aqcoe7G026900.1.p 542 IDSTMNRDGSERVKIEEC-LGRKAFNSVTCEGRERVERCELFGKWRARMRMAGFVTRPLGQHVAGSMKTKLNSVYrnNPGFTVKEEADGICF 632
                        ****************98.******************************************************9977789************ PP

               GRAS 361 gWkdrpLvsvSaW 373
                        gW+dr L+++SaW
  Aqcoe7G026900.1.p 633 GWNDRVLTVASAW 645
                        ************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.117245624IPR005202Transcription factor GRAS
PfamPF035141.1E-106273645IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MASGFPSGSL GGGGGGGGDF YINPTTSFGG GSAMINNNVQ LQYRQQQQQQ QQLQHLQHEQ  60
QFSSIPPRRN MSNFVGKRSI SELEKQQHLQ LQQGVLYRSV KQRNQYNHTS PISPLTPFDF  120
SSGNINNHQT SYSSSSSYSH PHLQQLRSFS STNSSSYNNN NPSFSNSSSS LVSNRVVSLE  180
KEFESKKKMR NTLQELEKQL LDDNEDDDVE GGGEGGDVVS IVTSSEWSET MQNLITPNHQ  240
ISNKKPPFSP SPTSSSSSSS ASSSSPQTSS SKQTFIDIAT AISDGNLDIA TTKLDHLSQV  300
SNFHGDSEQR FIAYMVSALR SRLNPTENSS NATQLFQNDH ILATQMLYES SPCFKLSFMA  360
ANLAILEATK DQPNNIHVLD FDIGQGNQYI SLIQSIAERR TKPIIIRITS VLLLHPEENQ  420
NQNQNQRIVG DRLRKFADHF GIGLKFNIVV CKTISSLNQE SLLCCENDEA EALVVNFAFK  480
LYKLSDESVS TENPRDELLR LVKSLKPRVV TMVEQEMNCN TATFVARVAE VSSYYLALFN  540
SIDSTMNRDG SERVKIEECL GRKAFNSVTC EGRERVERCE LFGKWRARMR MAGFVTRPLG  600
QHVAGSMKTK LNSVYRNNPG FTVKEEADGI CFGWNDRVLT VASAWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4128964521374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255275.10.0PREDICTED: scarecrow-like protein 8
TrEMBLA0A2G5E0M60.0A0A2G5E0M6_AQUCA; Uncharacterized protein
STRINGAquca_013_00249.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-123SCARECROW-like 8