PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Aqcoe7G005100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Dof

Protein Properties

Length: 290aa MW: 31857.9 Da PI: 8.1319

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe7G005100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.2e-39	38	99	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt GG+lrnvPvGgg+rknk+sss Aqcoe7G005100.1.p 38 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTDGGSLRNVPVGGGSRKNKRSSS 99 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-26	30	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-33	40	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.106	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDTAQWPQEI GLVKPIEGMV NNTCSSRPMI ERKARPQKEQ ALNCPRCNST NTKFCYYNNY 60 SLTQPRYFCK TCRRYWTDGG SLRNVPVGGG SRKNKRSSSS STSSGSASAS SKKLSDHITS 120 QSQNPKIHEG HDLNLSFQIT EPYQNISEYV DQVPNIDNNN NNNHNNNHNP SSTSSSLSAL 180 ELLRTGITSR GLNSFMPMPI PESNTSYSSS GFAMQDFKPT LNFGVDHGLG GSGYGNIHQG 240 GVQESSSGRL LFPFEDLRQV STITSEFEQN RGHGDSNGYW SGMLDGGSW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010252779.1	1e-127	PREDICTED: dof zinc finger protein DOF4.6-like isoform X1
Swissprot	Q8LAP8	3e-69	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A1U7ZI96	1e-125	A0A1U7ZI96_NELNU; dof zinc finger protein DOF4.6-like isoform X1
STRING	XP_010252779.1	1e-126	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	5e-54	Dof family protein

Link Out ? help Back to Top
Phytozome	Aqcoe7G005100.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]