PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Aqcoe6G303600.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 232aa MW: 25198.3 Da PI: 10.2413

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G303600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.6	0.00013	116	155	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r R +++ ++++ L++l+ + +K + a++L +A+ YI+ L Aqcoe6G303600.2.p 116 RVRKEKLGDRIAALQQLVSPF-----GKTDTASVLHEAMGYIRFL 155 77889999*********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.407	106	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-11	116	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-8	116	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.07E-5	116	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MATTKEEFAK NPISSMGNFI YPSSITTTFP SGNVPTMLCF NTNSENQKYR VLNGSESLSG 60 SSSNNSSSSS TITKSKRSRA GKGNTEQETK NLGSVESKKT IKKTKTGNPT STKTVRVRKE 120 KLGDRIAALQ QLVSPFGKTD TASVLHEAMG YIRFLHDQVQ VLSSPYLQGL PSSNNFIQDA 180 RGEEEVKRRY DLKSRGLCLV PIECTTQVAS SNGADFWSPA TMGSNILNLK H*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271336.1	1e-65	PREDICTED: transcription factor bHLH113
Swissprot	Q9LT67	8e-46	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A2G5C6X5	1e-170	A0A2G5C6X5_AQUCA; Uncharacterized protein
STRING	Aquca_083_00015.1	1e-147	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	9e-46	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aqcoe6G303600.2.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]