PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G101200.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 457aa    MW: 52520.6 Da    PI: 10.0294
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G101200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.83.6e-1719981398
                       TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                        +r  lp  f+++++++   s ++tl+ ++g++W++kl  rk  gr++l +GWkeFv+ + +++g +++F++dg+s+f  +v +++
  Aqcoe6G101200.3.p 19 DKRKDLPIMFVKKYEND--FSGDVTLKVPTGNVWNMKL--RKVNGRTYLCDGWKEFVDHHSVCAGYVLTFRYDGNSSF--YVIICD 98
                       567789********988..6779***************..99999*******************************99..999887 PP
2B3598.7e-19178274199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        f+ v+ ps+v  +++l +p +f+++h gk+ +++t+ + d ++ r W+ ++iy +++      +  Wk+F+k+n+L+e+D+++F+l++ ++ 
  Aqcoe6G101200.3.p 178 FVLVMQPSSVEGRCILNVPGSFLKKHIGKESCDITMFVSDdSHERIWRTRCIYyDNNVA----KFVWKKFAKDNDLRENDVCMFELSQMKSV 265
                        788999********************99999*******997888*******88555554....455********************998999 PP

                        ..EEEEE-S CS
                 B3  91 elvvkvfrk 99 
                        +++v++fr+
  Aqcoe6G101200.3.p 266 TFKVSIFRE 274
                        9*****996 PP
3B351.91.4e-16369453494
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                        +l +  +   g+l lp +f++++  k+e+   +++ d++gr+W v++  + +s++y l +GW+  v   +LkegD++ F+l++ ++f l++
  Aqcoe6G101200.3.p 369 KL-SRTYVHGGLLQLPSSFIRKYLPKTES--SVRIVDSKGRTWYVRY--NLNSQGY-LYQGWNTVVLKSNLKEGDVCAFELIDMENFILRL 453
                        34.444555678***********544444..6***************..9999997.566*********************9878885555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010198.1E-1013100IPR003340B3 DNA binding domain
CDDcd100171.78E-161598No hitNo description
PfamPF023621.7E-141998IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-2120107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.81624100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-1924109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-21170273IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-20172276IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-19176273No hitNo description
PfamPF023621.1E-15178274IPR003340B3 DNA binding domain
SMARTSM010198.3E-13178275IPR003340B3 DNA binding domain
PROSITE profilePS5086310.63178275IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.3E-18359449IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-18361450IPR015300DNA-binding pseudobarrel domain
CDDcd100175.30E-12364445No hitNo description
PfamPF023622.8E-15365452IPR003340B3 DNA binding domain
SMARTSM010194.1E-8365454IPR003340B3 DNA binding domain
PROSITE profilePS5086313.62365456IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MPRITSKQGG TNQFSCHRDK RKDLPIMFVK KYENDFSGDV TLKVPTGNVW NMKLRKVNGR  60
TYLCDGWKEF VDHHSVCAGY VLTFRYDGNS SFYVIICDMT TAEIEYPSKK VKLEDPAHGR  120
ETLVPGKNGV EKLNGDKSTH KLTAQLGELS VKNGQSRKLM AKERIKAMMP SKPKNPYFVL  180
VMQPSSVEGR CILNVPGSFL KKHIGKESCD ITMFVSDDSH ERIWRTRCIY YDNNVAKFVW  240
KKFAKDNDLR ENDVCMFELS QMKSVTFKVS IFREVEDVTP RVLRDTSKMQ VFNQSECRTA  300
KKKKVMNNGK VEALEVPSHG FVRGDGYGYP SKEESKGKNV ANKFLDRTVT RTRPMPFSFK  360
SDYHFFIIKL SRTYVHGGLL QLPSSFIRKY LPKTESSVRI VDSKGRTWYV RYNLNSQGYL  420
YQGWNTVVLK SNLKEGDVCA FELIDMENFI LRLSVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1515327821146B3 domain-containing transcription factor VRN1
4i1k_B4e-1515327821146B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-37B3 family protein