PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Aqcoe6G101000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Protein Properties

Length: 337aa MW: 38517.8 Da PI: 10.2025

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G101000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.9	1.3e-11	29	92	32	99
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +++l+ g W vkl +k + ++++kGW++F ++n ++ gD++vF+l g+s+f +vk+++k Aqcoe6G101000.1.p 29 LPNEVILKIAPGTCWIVKL--EKVENCVFFRKGWQGFLDDNAIEIGDMLVFSLFGKSKF--NVKIYDK 92 456799999999*****..999999************************999999..9999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.94E-17	7	98	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.81E-11	9	91	No hit	No description
SMART	SM01019	0.0041	11	93	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.2E-14	26	95	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	9.4E-10	29	92	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.758	32	93	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.18E-10	223	291	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.6E-10	223	289	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.09E-7	228	283	No hit	No description
PROSITE profile	PS50863	6.597	229	336	IPR003340	B3 DNA binding domain
SMART	SM01019	0.27	230	317	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MGRKPKNKPS FFKIMFGDFT EKLHFTGGLP NEVILKIAPG TCWIVKLEKV ENCVFFRKGW 60 QGFLDDNAIE IGDMLVFSLF GKSKFNVKIY DKTCCEKEST DRKKEKQGIV NGKCVELKGH 120 KGIQGKQRIV PEKISCESAI AKNRKVMNIN KTKALVVQSH GREHICTRKT RLIRQGDQIK 180 AKPVEKDALL QQAANWNSST LPWRIRQTVT PQQKCAYEAA ILFKSDYPFF IIKLSKSYME 240 RKYLNLPFGF VKAYFPNESK VVEIMDVEGR TWLVNYTRNL KTGLILSGCS KIYIEINPNN 300 LKDENKSSNN IQQCKNVQTA RIAATDQNIF KLEENS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	1e-16	B3 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe6G101000.1.p