PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Aqcoe6G082100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 262aa MW: 29723.9 Da PI: 8.3103

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G082100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.8	1e-06	113	132	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r nL+ H+ Aqcoe6G082100.1.p 113 FSCHICKKTFNRYNNLQMHM 132 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.47E-5	108	135	No hit	No description
SMART	SM00355	0.24	113	135	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.1E-4	113	132	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.388	113	140	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	115	135	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	160	192	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	4.29E-5	182	217	No hit	No description
SMART	SM00355	140	197	217	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MESPQMSSSS SDTLVETKNV ELLHPILNNT ENSLDLEPLP LLNYLLHAPK SPAHDKDETM 60 DADENEVRVT LHIGLPDCSN DSNTANDEKE ENAVANRYWI PSPAQILIGF THFSCHICKK 120 TFNRYNNLQM HMWGHGSQYR RGPESLRGAQ PRAMLSIPCY CCAEGCKNNI NHPRAKPLKD 180 FRTLQTHYKR KHGMKPYMCR KCGKFLAVKG DWRTHEKNCG KLWLCMCGSD FKHKRSLKDH 240 IKAFGPGHGP FPSSIDGMEN F*

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022766392.1	1e-126	protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	1e-107	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A200QUS8	1e-125	A0A200QUS8_9MAGN; Zinc finger protein
STRING	VIT_18s0001g05860.t01	1e-124	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-108	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe6G082100.1.p

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]