PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G038000.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 600aa    MW: 66726.4 Da    PI: 4.9174
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G038000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.92e-1382315993374
               GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        + L+ecA  +s+g++e+ ++++++l++++s +gdp  Rlaay++e+Laar+a s+++lykal+++e +   ++++l+a+++++e++P++kf+
  Aqcoe6G038000.2.p 231 QMLFECAALISEGNMEESSNIINKLRQMVSIQGDPPMRLAAYMVEGLAARIATSGKGLYKALKCKEPP---TTDRLSAMQILFEICPCFKFG 319
                        79*****************************************************************9...9******************** PP

               GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                        +++aN aI ea++ e+ vHi+Dfdi+qG Q+++L+qaLasR+++pp++RiTgv++pe++      l+ +g+rL+k+Ae +gvpfef +l a 
  Aqcoe6G038000.2.p 320 FMAANGAIAEAFKDEDGVHIVDFDINQGSQYITLIQALASRTGKPPHIRITGVDDPETVqrTVGGLKVIGQRLEKLAEGFGVPFEFCAL-AV 410
                        *********************************************************99778889***********************5.88 PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklp 276
                        ++ed+++++L+++p+Eal+Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq++++n+++Fl rf+ea +yysa+f+sl+a+lp
  Aqcoe6G038000.2.p 411 KTEDVTPSMLECRPNEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLKPKLVTVVEQDVNTNTAPFLPRFVEAYNYYSAVFESLDATLP 502
                        9******************************************************************************************* PP

               GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                        r s +r++vEr++l+r+ivn+vaceg++r+er e ++kWr+r+++aGFkp+pls++++ ++++ll+++ ++ y+v+ee g+l +gW+++ L+
  Aqcoe6G038000.2.p 503 RGSPDRMNVERQCLARDIVNIVACEGEDRIERYEVAGKWRARMTMAGFKPYPLSTHVNGTIRALLKQYCDR-YKVKEEGGALHFGWEEKILI 593
                        *********************************************************************66.******************** PP

               GRAS 369 svSaWr 374
                        ++SaWr
  Aqcoe6G038000.2.p 594 VASAWR 599
                        *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.136203580IPR005202Transcription factor GRAS
PfamPF035146.9E-136231599IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MSLISSADLS ATSYGEPKLY KLKKGNENSG LSTQIISSDK RIFKYGPESN CRESYNQHYF  60
SDSSTEDFPS SRMEFISPSI SGSPGAIFRP QGSASYQLIA GSDSISSGNS YSSFVSTRHP  120
NAYRPDSAAK YFDRLSPDHE IIDFDEDDIR LKLQELEREL LNDNDDDVFT VDQNMDIDCE  180
WADSIKNLVL PDSPKESSSE SDLSSISSNK DTLILQPVSS PRASQNLTPK QMLFECAALI  240
SEGNMEESSN IINKLRQMVS IQGDPPMRLA AYMVEGLAAR IATSGKGLYK ALKCKEPPTT  300
DRLSAMQILF EICPCFKFGF MAANGAIAEA FKDEDGVHIV DFDINQGSQY ITLIQALASR  360
TGKPPHIRIT GVDDPETVQR TVGGLKVIGQ RLEKLAEGFG VPFEFCALAV KTEDVTPSML  420
ECRPNEALVV NFAFQLHHMP DESVSTVNQR DQLLRMVKSL KPKLVTVVEQ DVNTNTAPFL  480
PRFVEAYNYY SAVFESLDAT LPRGSPDRMN VERQCLARDI VNIVACEGED RIERYEVAGK  540
WRARMTMAGF KPYPLSTHVN GTIRALLKQY CDRYKVKEEG GALHFGWEEK ILIVASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-7123559825378Protein SCARECROW
5b3h_A1e-7123559824377Protein SCARECROW
5b3h_D1e-7123559824377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649367.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_019075083.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_019075084.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_019075085.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2G5DW500.0A0A2G5DW50_AQUCA; Uncharacterized protein
STRINGAquca_014_00370.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]