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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Aqcoe6G015700.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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| Family |
C2H2 |
| Protein Properties |
Length: 365aa MW: 41870.5 Da PI: 6.5063 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aqcoe6G015700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.3 | 0.00012 | 82 | 104 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23
C+ Cgk+F++ L++H H
Aqcoe6G015700.1.p 82 CSyeGCGKTFTDAGALRKHSHIH 104
77779**************7766 PP
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| 2 | zf-C2H2 | 15.6 | 4.7e-05 | 109 | 133 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
y C+ Cgk F ++s LkrH H
Aqcoe6G015700.1.p 109 YICHyeGCGKKFLDSSKLKRHFLIH 133
89*******************8877 PP
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| 3 | zf-C2H2 | 22.2 | 3.6e-07 | 139 | 163 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
++Cp Cgk Fs nL+ H+rtH
Aqcoe6G015700.1.p 139 FVCPheGCGKAFSLDFNLRAHMRTH 163
89**********************9 PP
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| 4 | zf-C2H2 | 17.3 | 1.3e-05 | 169 | 193 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
+ Cp dCgk++ + + Lk+Hi++H
Aqcoe6G015700.1.p 169 HICPyqDCGKRYAHEYKLKTHIKSH 193
68**********************6 PP
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| 5 | zf-C2H2 | 13.2 | 0.00026 | 232 | 257 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
y Cp C k + + + L+ H+r+ H
Aqcoe6G015700.1.p 232 YACPyeGCEKAYIHEYKLNLHLRReH 257
89*********************999 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:3.30.160.60 | 5.0E-14 | 75 | 106 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.0011 | 80 | 104 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 11.219 | 80 | 109 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 82 | 104 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 3.1E-8 | 83 | 133 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 2.8E-14 | 107 | 129 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.0029 | 109 | 133 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 13.692 | 109 | 138 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 111 | 133 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 2.05E-14 | 120 | 172 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 1.1E-19 | 130 | 161 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 2.9E-4 | 139 | 163 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 12.944 | 139 | 168 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 141 | 163 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 5.5E-12 | 162 | 195 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.0047 | 169 | 193 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 11.198 | 169 | 198 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 171 | 194 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 1.9E-8 | 227 | 255 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 2.73E-5 | 227 | 255 | No hit | No description |
| SMART | SM00355 | 0.0097 | 232 | 257 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.93 | 232 | 262 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 234 | 257 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 365 aa
Download sequence Send
to blast |
MDYQSNNNHH NPFDRRPILK SKAPAVQWVK EWVPQEVVST GGKCLVLKWV KMDVLKELKA 60
KPEEPEPEEQ EPEETTEVLF LCSYEGCGKT FTDAGALRKH SHIHGERQYI CHYEGCGKKF 120
LDSSKLKRHF LIHTGERHFV CPHEGCGKAF SLDFNLRAHM RTHSQENYHI CPYQDCGKRY 180
AHEYKLKTHI KSHHEKHPTM DMMKRTPTSE KTPSAPKPPA VVYGSASSDR PYACPYEGCE 240
KAYIHEYKLN LHLRREHPGH NMEGNGKHTT EIDNDMDEGS VQDAYSRKSS SKFPKLSKPQ 300
TPKMTQSKPT QRKVSSVSPA NLNVMKQQWP GKDVYDGEDS EETEEDHDDD SSDDSDDEET 360
EDEE*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
| Publications
? help Back to Top |
- Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
DNA Res., 2001. 8(6): p. 285-90
[PMID:11853315] - Li T,Wu XY,Li H,Song JH,Liu JY
A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
Mol Plant, 2016. 9(5): p. 650-661
[PMID:26961720] - Wu XY,Li T
A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
Front Plant Sci, 2017. 8: p. 323
[PMID:28348572]
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