PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G426200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 179aa    MW: 19906.3 Da    PI: 5.2436
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G426200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.42e-141362155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       s y+G+r ++ +g+Wv eIr+p++   ++r++lg+f t+e+Aa a++ a   l+g
  Aqcoe5G426200.1.p 13 SSYRGIR-CR-SGKWVTEIREPRK---TTRIWLGTFPTPEMAATAYDVASYFLKG 62
                       67****9.55.6*********843...5*******************99887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.66E-241372No hitNo description
SuperFamilySSF541717.85E-171371IPR016177DNA-binding domain
SMARTSM003803.7E-241476IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-241471IPR001471AP2/ERF domain
PfamPF008479.7E-91462IPR001471AP2/ERF domain
PROSITE profilePS5103219.191470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MTSTNQRISG NHSSYRGIRC RSGKWVTEIR EPRKTTRIWL GTFPTPEMAA TAYDVASYFL  60
KGDDTVLNFP ELVHSYPVPE SRSPSDIRAA AVAAAAMRVH PRAAATTGTE NYFRSRNSLY  120
ICNGGEGDDF VDEEALFDMP MLLHSMAQGM LLSPPRIDSY VCDDSVENMY GDSLWNYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-15176175Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278525.18e-64PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9FJ905e-48ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1U8BN802e-62A0A1U8BN80_NELNU; ethylene-responsive transcription factor ERF026-like
STRINGXP_010278525.13e-63(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-44ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]