PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G351500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family SBP
Protein Properties Length: 393aa    MW: 43398.6 Da    PI: 8.3124
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G351500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.41.5e-4194170278
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        C v+gC+adls++++yhrrhkvCevhsk+p v+v g+eqrfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  Aqcoe5G351500.1.p  94 CLVDGCTADLSKCRDYHRRHKVCEVHSKTPRVTVGGQEQRFCQQCSRFHMLVEFDEVKRSCRKRLDGHNRRRRKPQP 170
                        **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575131No hitNo description
Gene3DG3DSA:4.10.1100.102.5E-3387155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.93291168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-3992173IPR004333Transcription factor, SBP-box
PfamPF031104.0E-3094167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDWDMKTPSW DFLEFDRETG PNIASLVGSS CLGEQRPRGD CSVDLKLGRL GDFGEGTVNK  60
WKDPRNSTMS SSSSPLSSVK RPRALGNGTQ IVSCLVDGCT ADLSKCRDYH RRHKVCEVHS  120
KTPRVTVGGQ EQRFCQQCSR FHMLVEFDEV KRSCRKRLDG HNRRRRKPQP ESLSMNSGSL  180
FSHHQGTRLV PFSNAQVRPS TTVMSSAWKA VVKTEEDAAQ YNSHPSLHYV DRHNPFPGSF  240
SGSFKREKQF PFLPVNNPVG GHSVAEVSVC QPLLNTIASS QSGRTSRKMF SDGLNQVLDS  300
DCALSLLSSP PTQTSGINMS HLVQPNNIPI AQPLVSVMQY NGLGGYQSQG IEGEPMDNVL  360
VSDTNDSEIH CHGIYNGSSQ NGVQQRLPFS WE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28941671184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150167KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250660.10.0PREDICTED: teosinte glume architecture 1-like
RefseqXP_010250661.10.0PREDICTED: teosinte glume architecture 1-like
RefseqXP_010250662.10.0PREDICTED: teosinte glume architecture 1-like
TrEMBLA0A2G5E5N10.0A0A2G5E5N1_AQUCA; Uncharacterized protein
STRINGAquca_011_00114.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-59SBP family protein