PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe4G284300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 360aa    MW: 40896.5 Da    PI: 9.7848
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe4G284300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.81.9e-18193288198
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k+++ s+v +  +l +p kf+++h    ++++++++++ l de+g + + ++i ++++    l++GW++F+ +++L+ gD +vF+l++ +
  Aqcoe4G284300.1.p 193 FVKTMLDSHVASVFWLGIPTKFCKKHlptgKKDENRNIEMDLVDEKGYRITTNHIRDRTG----LRAGWRGFAIDHKLDFGDALVFELTDPR 280
                        89***************************9888899******************555555....***********************97655 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        +f  +v +f+
  Aqcoe4G284300.1.p 281 TF--KVYIFK 288
                        55..888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.18206.0E-790124IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534743.51E-591127IPR029058Alpha/Beta hydrolase fold
PfamPF004509.6E-691126IPR001563Peptidase S10, serine carboxypeptidase
SuperFamilySSF1019362.94E-21189288IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-19189289IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-24191288No hitNo description
PROSITE profilePS5086311.279193290IPR003340B3 DNA binding domain
PfamPF023628.0E-16193288IPR003340B3 DNA binding domain
SMARTSM010192.3E-17193290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006508Biological Processproteolysis
GO:0003677Molecular FunctionDNA binding
GO:0004185Molecular Functionserine-type carboxypeptidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MQYSPPPQFM SPTTTTMPGV QFSNFNAASS FNAPSMPQAP QQQSTWRPPP PPTVSQPYMR  60
PPPANREAFR PPEYPLHGTS AQRSYKCEKG GVSINSHSWT KVANIIFMDT GFSYSKTKQE  120
SNISDDLSIF EKTYADNILH SCISGINLAY IRESNCLRQV PPVENISSDN RRSLKRSRKS  180
LLRERFPKWN PSFVKTMLDS HVASVFWLGI PTKFCKKHLP TGKKDENRNI EMDLVDEKGY  240
RITTNHIRDR TGLRAGWRGF AIDHKLDFGD ALVFELTDPR TFKVYIFKAC ESLESEDSTM  300
EDLPSEKTDN DLEQLKPRKK VAKRSTREKI LTLPKGDSED IGGKLKKALS YYEIKGCKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176RRSLKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-26B3 family protein